View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21389_low_2 (Length: 613)
Name: NF21389_low_2
Description: NF21389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21389_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 22 - 592
Target Start/End: Complemental strand, 33162153 - 33161576
Alignment:
| Q |
22 |
ctgcggatatcgtcgggaaatagggtacatgcactgccggcgggagggtggacggtgtcagagttgaagtttcggttgaaaccgagtgggagtttttgtg |
121 |
Q |
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| T |
33162153 |
ctgcggatatcgtcgggaaatagggtacatgcactgccggcgggagggtggacggtgtcagagttgaagtttcggttgaaaccgagtgggagtttttgtg |
33162054 |
T |
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| Q |
122 |
gtgacgtagaagcaaagaattctggtgggaggttactgtcgccggcgctgtcttcagcggcggtggctgtggc------ggtggttgtgaaatttggtgt |
215 |
Q |
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| T |
33162053 |
gtgacgtagaagcaaagaattccggtgggaggtaaccgtcgccggcgctgtcttcagcggcggtggctgtggctgtggcggtggttgtgaaatttggtgt |
33161954 |
T |
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| Q |
216 |
acacgtggaggaatggtaagttgaggaaagaaagagtgttatgaggtttgtgaataaaaggagggaaatgaagagtaaattggtggttagggtttttgga |
315 |
Q |
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| T |
33161953 |
acacgtggaggaatggtaagttgaggaaagaaagagtgttatgaggtttgtgaataaaaggagggaaatgaagagtaaattggtggttagggtttttgga |
33161854 |
T |
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| Q |
316 |
ttagggttaatattagaacccatgttacaaaa-taggaatgtgtttattggtttgttatagattgattttgagtttgattatggttactaagcttcgaag |
414 |
Q |
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| T |
33161853 |
ttagggttaatattagaacccatgttacaaaaataggaatgtgtttattggtttgttatagattgattttgagtttgattatggttactaagcttcgaag |
33161754 |
T |
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| Q |
415 |
gtagccatttttatgtgaagattttaagcattttcttattaagttattgtcaagtgttaaggattcctttggtatagtattatattgtgtgctaagcact |
514 |
Q |
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| T |
33161753 |
gtagccatttttatgtgaagattttaagcattttcttattaagttattgtcaagtgttaaggattcctttggtatagtattatattgtgtgctaagcact |
33161654 |
T |
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| Q |
515 |
aactggaggtagatcatgatgagttttgacttataatgtgttttatagaaagtcgacagtttgaccaagattttccac |
592 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33161653 |
aagtggaggtagatcatgatgagttttgacttataatgtgttttatagaaagtcaacagtttgaccaagattttccac |
33161576 |
T |
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