View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21389_low_3 (Length: 592)
Name: NF21389_low_3
Description: NF21389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21389_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 144 - 575
Target Start/End: Complemental strand, 44566707 - 44566276
Alignment:
| Q |
144 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
243 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566707 |
ctaaccgaatccacagaagagattaaggaaacgacacacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
44566608 |
T |
|
| Q |
244 |
taaaccatgggggtgatgtcattgtatcagaagtattaacttgacaatgtttcatccggccgttttcagtcagcaaaaaagcaaatgtccatgtgactgc |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566607 |
taaaccatgggggtgatgtcattgtatcagaagtattaacttgacaatgtttcatccggccgttttcagtcagcaaaaaagcaaatgtccatgtgactgc |
44566508 |
T |
|
| Q |
344 |
caaacccaaaggcacctgtaaattaggtaaagaaaataatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaa |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566507 |
caaacccaaaggcacctgtaaattaggtaaagaaaataatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaa |
44566408 |
T |
|
| Q |
444 |
ctcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgccaaaagcaatatata |
543 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44566407 |
ctcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgcaaaaagcaatatata |
44566308 |
T |
|
| Q |
544 |
ataaaatatatcagcacactgcaacgattaat |
575 |
Q |
| |
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| T |
44566307 |
ataaaatatatcagcacactgcaacgattaat |
44566276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 308 - 539
Target Start/End: Original strand, 36032639 - 36032874
Alignment:
| Q |
308 |
ttcagtcagcaaaaaagcaaatgtccatgtgactgccaaacccaaaggcacctgtaaattaggtaaagaaaata----atatcacttaacaaaaatcatt |
403 |
Q |
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| T |
36032639 |
ttcagtcagcaagaaagcaactgcccatgtaattgccaaacccaaaggaacctgcaaattaggtaaaaaaaatatataacatcacttaacagaaatcatt |
36032738 |
T |
|
| Q |
404 |
ttttacaccacagaaatttattttctcttctgaagagcaactcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaa |
503 |
Q |
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| |||||| ||||||||||||||| || || |||| ||||| |||| ||| | ||||||| ||||||||||||||| |||||||| | ||||||| |
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| T |
36032739 |
tgttacacagcagaaatttattttcactgctatagagtaactcggaaggatattatggcattgcacttactgcatatattagaaatatgcggtgtccaag |
36032838 |
T |
|
| Q |
504 |
aacagatatcttacgaagatactgccaaaagcaata |
539 |
Q |
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| T |
36032839 |
aacagatatcttacgaagatactgcagaaagcaata |
36032874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 144 - 300
Target Start/End: Original strand, 36032397 - 36032553
Alignment:
| Q |
144 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
243 |
Q |
| |
|
|||||||||||||| || |||||||||||||| || |||||||||| |||||||||||| | ||| ||||||||||||||||||| ||||||||||||| |
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| T |
36032397 |
ctaaccgaatccacggatgagattaaggaaaccacacacatcacaagagccattttccagtggaagacaggagtaccccattgcaatggatagggaaatt |
36032496 |
T |
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| Q |
244 |
taaaccatgggggtgatgtcattgtatcagaagtattaacttgacaatgtttcatcc |
300 |
Q |
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|||||||||||| |||| | |||| || ||||||| |||| |||||| |||||||| |
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| T |
36032497 |
taaaccatggggatgatttgattgcatgcgaagtatcaactcgacaatatttcatcc |
36032553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 44566850 - 44566765
Alignment:
| Q |
1 |
tcttattttagggatagaaaatcgagtcatgcactgtgttgttccattgaacgagatcaagttagactataaacgtactcagagtc |
86 |
Q |
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| T |
44566850 |
tcttattttagggatagaaaatcgagtcatgcactgtgttgttccattgaacgagatcaagttagactatcaacgtattcagagtc |
44566765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 144 - 300
Target Start/End: Complemental strand, 20122606 - 20122450
Alignment:
| Q |
144 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
243 |
Q |
| |
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|||||||||||||| || |||||||||||||| || ||||| |||| |||||||||||| | || |||||| ||||||||| | ||||||||||||| |
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| T |
20122606 |
ctaaccgaatccacggatgagattaaggaaaccacacacattacaagagccattttccagtgaaagacaggaacaccccattgtaacggatagggaaatc |
20122507 |
T |
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| Q |
244 |
taaaccatgggggtgatgtcattgtatcagaagtattaacttgacaatgtttcatcc |
300 |
Q |
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|||||||||| | ||| ||| || || |||||||| ||| ||||||| ||||||| |
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| T |
20122506 |
taaaccatggagaggatttcaatgcatgagaagtatcaacccgacaatgcttcatcc |
20122450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 468 - 527
Target Start/End: Complemental strand, 20122217 - 20122158
Alignment:
| Q |
468 |
acttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactg |
527 |
Q |
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||||||||| || || |||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
20122217 |
acttactgcgtagattagaaatatgcgatgtccaagaacagatatcttacgaagatactg |
20122158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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