View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21389_low_6 (Length: 349)

Name: NF21389_low_6

Description: NF21389

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21389_low_6

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 161; Significance: 8e-86; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 161; E-Value: 8e-86

Query Start/End: Original strand, 56 - 216

Target Start/End: Original strand, 50496889 - 50497049

Alignment:

Q	56	actatatgagttttttatttgaaagaagattgactgtacgagttattattgagtaaaataatttcttcctcaataatacgcatccctcactttagcttgg	155	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50496889	actatatgagttttttatttgaaagaagattgactgtacgagttattattgagtaaaataatttcttcctcaataatacgcatccctcactttagcttgg	50496988	T

Q	156	tgtcgcccagattggatcctttgtgaatttaattttgcttgagattagataattcaactat	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50496989	tgtcgcccagattggatcctttgtgaatttaattttgcttgagattagataattcaactat	50497049	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2

Raw Score: 51; E-Value: 4e-20

Query Start/End: Original strand, 17 - 71

Target Start/End: Original strand, 50496694 - 50496748

Alignment:

Q	17	acacttttaatcaatattatttaatactttaaaattatgactatatgagtttttt	71	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50496694	acacttttaattaatattatttaatactttaaaattatgactatatgagtttttt	50496748	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]