View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21389_low_7 (Length: 251)
Name: NF21389_low_7
Description: NF21389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21389_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 29196641 - 29196877
Alignment:
| Q |
1 |
tcaccaaatccttcatacttaactttgaaaatatataagacatgacacaatcaggtaactccttcttagtatgctcaaaacattctctcttcaccttttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29196641 |
tcaccaaatccttcatacttaactttgaaaatatataagacatgacacaatcaggtaactccttcttagtatgctcaaaacattctctcttcaccttttc |
29196740 |
T |
|
| Q |
101 |
aattctattcattgtcacctaaatatgaatgaaaacatatgaattacttctcatgaataaattttaatatatcacacggcaaagtttaatctaaactnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29196741 |
aattctattcattgtcacctaaatatgaatgaaaacatatgaattacttctcatgaataaattttaatatatcacacggcaaagtttaatctaaactaaa |
29196840 |
T |
|
| Q |
201 |
nnnnnnnnnntacataccttaattcgtggatgctaag |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
29196841 |
aaaaaaaaaatacataccttaattcgtggatgctaag |
29196877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 38173627 - 38173689
Alignment:
| Q |
1 |
tcaccaaatccttcatacttaactttgaaaatatataagacatgacacaatcaggtaactcct |
63 |
Q |
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||||||||||||||| || |||||||||||| ||||| || || ||||||||||| ||||||| |
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| T |
38173627 |
tcaccaaatccttcaaacataactttgaaaagatatatgatataacacaatcaggcaactcct |
38173689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38286675 - 38286729
Alignment:
| Q |
1 |
tcaccaaatccttcatacttaactttgaaaatatataagacatgacacaatcagg |
55 |
Q |
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||||||||||||||| || |||||||||||| ||||| || || ||||||||||| |
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| T |
38286675 |
tcaccaaatccttcaaacataactttgaaaagatatatgatataacacaatcagg |
38286729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36745337 - 36745397
Alignment:
| Q |
1 |
tcaccaaatccttcatacttaactttgaaaatatataagacatgacacaatcaggtaactc |
61 |
Q |
| |
|
||||||||||||||| | |||||| ||||| |||||||| || ||||||||||| ||||| |
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| T |
36745337 |
tcaccaaatccttcaaagctaacttggaaaagatataagatataacacaatcaggcaactc |
36745397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2224075 - 2224129
Alignment:
| Q |
1 |
tcaccaaatccttcatacttaactttgaaaatatataagacatgacacaatcagg |
55 |
Q |
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||||||||||||||| || |||||||||||| ||||| || || ||||||||||| |
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| T |
2224075 |
tcaccaaatccttcaaacctaactttgaaaagatatatgatataacacaatcagg |
2224129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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