View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21389_low_8 (Length: 250)
Name: NF21389_low_8
Description: NF21389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21389_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 31859776 - 31859986
Alignment:
| Q |
32 |
cactttcatcaaccatgtttatctctgaaggatgttttttatgttcataaacgtatgccaactaatgaaaatctcattcaagagtcgtggaccaatgatg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31859776 |
cactttcatcaaccatgtttatctctgaaggatgttttttatgttcataaacgtatgccaactaatgaaaatctcattcaagagtcgtggaccaacgatg |
31859875 |
T |
|
| Q |
132 |
gtatcatcaatttgttatgnnnnnnnnacgatgatattgatacaaaatttccactgtttgtaaatgatctccgtcaaggaacatgtgaggaatacaagat |
231 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
31859876 |
gtatcatcaatttgttatgttttttttacggtgatattgatacaaaatttccacggtttgtgaatgatctccgtcaaggaatctgtgaggaatataagat |
31859975 |
T |
|
| Q |
232 |
ggattcttctc |
242 |
Q |
| |
|
||||||||||| |
|
|
| T |
31859976 |
ggattcttctc |
31859986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31859714 - 31859760
Alignment:
| Q |
1 |
ctaaggaataattaagtcaaatgatttttatcactttcatcaaccat |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31859714 |
ctaaggaataattaagtcaaatgatttttatcactttcatcaaccat |
31859760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University