View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21389_low_9 (Length: 244)
Name: NF21389_low_9
Description: NF21389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21389_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31859690 - 31859464
Alignment:
| Q |
1 |
aaaatatccttaagagataagactccataatttacattatttattccacaccaagataaataatttagaaaaaatattccactttgcacaaatagtccac |
100 |
Q |
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| T |
31859690 |
aaaatatccttaagagataagactccataagttacattatttattccacac---gataaataatttagaaaaaatattccactttgcacaaatagtccac |
31859594 |
T |
|
| Q |
101 |
taattgattaatttatagtagtatatgtacatatacgtttttctttgaaatataataatactccaaatttatatgtctatcatttgaagacttagactga |
200 |
Q |
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||| |||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
31859593 |
taaatgattaatttatagcagcatatgtacatatacgtttttctttgaaatatcataatactccaaatttatttgtctatcatttgaagacttagactaa |
31859494 |
T |
|
| Q |
201 |
t-aaaaaatccattggttgatgatataatt |
229 |
Q |
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| ||||||||||||| |||||||||||||| |
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| T |
31859493 |
taaaaaaatccattgattgatgatataatt |
31859464 |
T |
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