View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2138_high_10 (Length: 439)
Name: NF2138_high_10
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 32723132 - 32723546
Alignment:
| Q |
10 |
attattctgcctaaactccaaaaattgagaagctctccaatttagagtataccttaaccattctcttatcggcaataaactcgacattctcagaaaaatc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32723132 |
attattctgcctaaactccaaaaattgagaagccctccaatttagagtataccttaatcattctcttatcggcaataaactcgacattctcagaaaaatc |
32723231 |
T |
|
| Q |
110 |
atcaccatcattctgagaatccgaaaagtaagcctcaggacacctacacgaaattctatatcttgtgcaaaaaggaatccaccactttgcaaatttccaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32723232 |
atcaccatcattctgagaatccgaaaagtaagcctcaggacacctacacgaaattctgtatcttgtgcaaaaaggaatccaccactttgcaaatttccaa |
32723331 |
T |
|
| Q |
210 |
gcctccttcataccattcaacgtaataggcgaaccaccatcatcagaaacatacacatgaagtttctcaggtggataatccattgccatagctgataaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32723332 |
gcctccttcataccattcaacgtaataggcgaaccaccatcatcagaaacatacacatgaagtttctcaggtggataatccattgccatagctgataaaa |
32723431 |
T |
|
| Q |
310 |
cagtgttcataacatctaaagtaggttccttagttgggtctgcagtgcatataaacacatcaatgttaggaagtttgtcattttcaggtagtctttctgg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32723432 |
cagtgttcataacatctaaagtaggttccttagttgggtctgcagtgcatataaacacatcaatgttaggaagtttgtcattttcaggtagtctttctgg |
32723531 |
T |
|
| Q |
410 |
aaagacggttctttt |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32723532 |
aaagacggttctttt |
32723546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 390
Target Start/End: Original strand, 34819603 - 34819810
Alignment:
| Q |
183 |
ggaatccaccactttgcaaatttccaagcctccttcataccattcaacgtaataggcgaaccaccatcatcagaaacatacacatgaagtttctcaggtg |
282 |
Q |
| |
|
|||| ||||||| ||||||| | |||||||| | ||| ||||| || || || || |||| |||||||| |||| ||||||||||| ||||| | | |
|
|
| T |
34819603 |
ggaagccaccaccttgcaaactcccaagccttcctcacaccatacagagtcatgggggaacacccatcatctgaaagatacacatgaatcttctcttgag |
34819702 |
T |
|
| Q |
283 |
gataatccattgccatagctgataaaacagtgttcataacatctaaagtaggttccttagttgggtctgcagtgcatataaacacatcaatgttaggaag |
382 |
Q |
| |
|
||||||| | |||||| | |||||||||||||||||| || |||||||| |||||||| |||| |||||||||||||| |||||||||| | |||||| |
|
|
| T |
34819703 |
gataatctagtgccatggatgataaaacagtgttcatcacctctaaagtgggttccttgattggatctgcagtgcatatgaacacatcaacggcaggaag |
34819802 |
T |
|
| Q |
383 |
tttgtcat |
390 |
Q |
| |
|
||||||| |
|
|
| T |
34819803 |
cttgtcat |
34819810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University