View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2138_high_11 (Length: 434)
Name: NF2138_high_11
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_high_11 |
 | |
|
| [»] scaffold0088 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0088 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 29 - 376
Target Start/End: Original strand, 49358 - 49705
Alignment:
| Q |
29 |
ggtgttaaaggagtatatgtatcaatagatgtggattgtcttgatcatgattacgctagagaagagtctttacatgaatcaagggcactttctttacaag |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49358 |
ggtgttaaaggagtatatgtatcaatagatgtggattgtcttgatcatgattacgctagagaagtgtctttacatgaatcaagggcactttctttacaag |
49457 |
T |
|
| Q |
129 |
atgttctcaatattcttcaaaatctcgaaggtgatatcgttggtggagatgttgtcgagtacaacccacaacatgatgatactgattataagaagattgc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |
|
|
| T |
49458 |
atgttctcaatattcttcaaaatctcgaaggtgatatcgttggtggagatgttgtcgagtacaacccacaacatgatgatactaattataagacgactgc |
49557 |
T |
|
| Q |
229 |
ccgggttactgctaaactgatcaaagaattagctgcaaaaatgtccaaatgatgaatccatctctgaactgccatctgctatttgaattattgcgttctt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49558 |
ccgggttactgctaaactgatcaaagaattagcggcaaaaatgtccaaatgatgaatccatctctgaactgccatctgctatttgaattattgcgttctt |
49657 |
T |
|
| Q |
329 |
tttaattttaatctgtgtcgactatggcgatacttaaaataaggagca |
376 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
49658 |
tttaattttgttttgtgtcgactatggcgatacttaaaatacggagca |
49705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 8482122 - 8482049
Alignment:
| Q |
132 |
ttctcaatattcttcaaaatctcgaaggtgatatcgttggtggagatgttgtcgagtacaacccacaacatgat |
205 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||||||||| || || ||||| ||||||| |||| |
|
|
| T |
8482122 |
ttctcaatatccttcaaaatcttcaaggtgatattgttggtggagatgtggttgaatacaatccacaacgtgat |
8482049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 8482240 - 8482182
Alignment:
| Q |
14 |
cagaaactaggaggtggtgttaaaggagtatatgtatcaatagatgtggattgtcttga |
72 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||| |||||||||||||||| |||||| |
|
|
| T |
8482240 |
cagaaactaggtgaaggtgttaagggagtatatgtttcaatagatgtggattctcttga |
8482182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 8471877 - 8471817
Alignment:
| Q |
14 |
cagaaactaggaggtggtgttaaaggagtatatgtatcaatagatgtggattgtcttgatc |
74 |
Q |
| |
|
||||||||||| | ||||| ||||| |||||| | ||||||||||||||||||||||||| |
|
|
| T |
8471877 |
cagaaactaggggaaggtgtgaaaggtgtatatatctcaatagatgtggattgtcttgatc |
8471817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University