View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2138_high_12 (Length: 417)

Name: NF2138_high_12
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2138_high_12
NF2138_high_12
[»] chr8 (17 HSPs)
chr8 (19-311)||(25489255-25489547)
chr8 (149-311)||(25646202-25646369)
chr8 (149-276)||(24913783-24913915)
chr8 (184-311)||(25603826-25603951)
chr8 (212-311)||(25799544-25799640)
chr8 (249-311)||(25694637-25694699)
chr8 (354-407)||(25489590-25489643)
chr8 (238-311)||(25321934-25322004)
chr8 (354-407)||(25694742-25694795)
chr8 (162-251)||(25569119-25569208)
chr8 (354-407)||(25646412-25646465)
chr8 (354-402)||(24913658-24913706)
chr8 (354-407)||(25322047-25322098)
chr8 (354-407)||(25604000-25604053)
chr8 (178-226)||(25321889-25321937)
chr8 (370-407)||(25799658-25799695)
chr8 (122-150)||(25385414-25385442)
[»] scaffold0070 (3 HSPs)
scaffold0070 (149-276)||(17826-17951)
scaffold0070 (354-399)||(17704-17749)
scaffold0070 (122-150)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (152-197)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (152-197)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 25489255 - 25489547
Alignment:
Q  19 aaaagcagcaacaactattcatgatatatcatcaaagagtttaattactggaagcaattgnnnnnnnnnaaacatcttttttgcttgttgatttcgggca 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||||||||| |||    
T  25489255 aaaagcagcaacaactattcatgatatatcatcaaatagtttaattactggaagcaattgtttttttttaaacatcttttttgcttgttgatttcgtgca 25489354  T
Q  119 aacaatatatttttgtacttttgacacaagattatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489355 aacaatatatttttgtacttttgacacaagattatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaac 25489454  T
Q  219 tgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 311  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489455 tgattagaaagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25489547  T

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Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 149 - 311
Target Start/End: Original strand, 25646202 - 25646369
Alignment:
Q  149 attatgtagcaacctagtaagtaga-----caccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaag 243  Q
    |||||||||||||||||||||||||     ||||||||| ||| |||||||||||||||||||||||  ||||||||||||||  |||||||||||||||    
T  25646202 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaactaaaaactgattagaaggttcagtaatagaag 25646301  T
Q  244 atcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 311  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25646302 atcttttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25646369  T

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Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 24913915 - 24913783
Alignment:
Q  149 attatgtagcaacctagtaagtagac-----accacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaag 243  Q
    ||||||||||||||||||||||||||     |||||||| ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  24913915 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaaccaaaaactgattagaaagttcagtaatagaag 24913816  T
Q  244 atcttttcttcctattcttacacaatgagtcaa 276  Q
    |||||||||||| ||||||||||||||||||||    
T  24913815 atcttttcttcccattcttacacaatgagtcaa 24913783  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 311
Target Start/End: Original strand, 25603826 - 25603951
Alignment:
Q  184 tatgacataaaagacagaaatattcaatcaaaa-actgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagaccct 282  Q
    ||||||| ||||| ||||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  25603826 tatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatataagatcttttcttcccattcgtacacaatgagtcaagaccct 25603925  T
Q  283 tactactattctcctccaaagactgcacc 311  Q
     |||||   ||||||||||||||||||||    
T  25603926 cactac---tctcctccaaagactgcacc 25603951  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 25799544 - 25799640
Alignment:
Q  212 caaaaactgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 311  Q
    ||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||   ||||||||||||||||||||    
T  25799544 caaaaactgattacaaagttcagtaatagaagatcttttcttcccattcttacacaatgattcaagaccctcactac---tctcctccaaagactgcacc 25799640  T

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Target: chr8; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 25694637 - 25694699
Alignment:
Q  249 ttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 311  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25694637 ttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25694699  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 25489590 - 25489643
Alignment:
Q  354 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489590 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 25489643  T

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Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 25321934 - 25322004
Alignment:
Q  238 tagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 311  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  25321934 tagaagatcttttcttcccattcttacacaatgagtcaagaccctcactac---tctcctccaaagactgcacc 25322004  T

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Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 25694742 - 25694795
Alignment:
Q  354 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 407  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25694742 gagaggggatacaacataaatggatacagtacacacgatttacatgcttctgtg 25694795  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 25569119 - 25569208
Alignment:
Q  162 ctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatcttttc 251  Q
    ||||||| ||||||||||||| ||||||| | |||| | |||||| |||  ||||| |||||||  ||||||||||||||||||||||||    
T  25569119 ctagtaactagacaccacctggtatgacagagaagaaataaatatgcaacaaaaaaatgattagcaagttcagtaatagaagatcttttc 25569208  T

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Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 25646412 - 25646465
Alignment:
Q  354 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 407  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||| ||||    
T  25646412 gagaggggatacaacataaatggatatagtacacacgatttacatgcttttgtg 25646465  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 24913706 - 24913658
Alignment:
Q  354 gagaggggatacaacataaatggatacaatacacacgatttacatgctt 402  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  24913706 gagaggggatacaacataaatggatagagtacacacgatttacatgctt 24913658  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 25322047 - 25322098
Alignment:
Q  354 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 407  Q
    ||||||||||||||  |||||||||||| ||||||| |||||||||||||||||    
T  25322047 gagaggggatacaa--taaatggatacagtacacacaatttacatgcttctgtg 25322098  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 25604000 - 25604053
Alignment:
Q  354 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 407  Q
    ||||||| |||||| ||| ||||||| | |||||||||||||||||||||||||    
T  25604000 gagagggtatacaatatatatggatatagtacacacgatttacatgcttctgtg 25604053  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 25321889 - 25321937
Alignment:
Q  178 acctgatatgacataaaagacagaaatattcaatcaaaaactgattaga 226  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||||||||    
T  25321889 acctgctatgacataaaaggcagatatattcaaccaaaaactgattaga 25321937  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 407
Target Start/End: Original strand, 25799658 - 25799695
Alignment:
Q  370 taaatggatacaatacacacgatttacatgcttctgtg 407  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  25799658 taaatggatacagtacacaccatttacatgcttctgtg 25799695  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 25385414 - 25385442
Alignment:
Q  122 aatatatttttgtacttttgacacaagat 150  Q
    |||||||||||||||||||||||||||||    
T  25385414 aatatatttttgtacttttgacacaagat 25385442  T

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Target: scaffold0070 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 17951 - 17826
Alignment:
Q  149 attatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatctt 248  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| | || ||||||||||||||| ||||||||||||||  |||||    
T  17951 attatgtagcaacctagtaagtagacaccacctgctataacataaaagacaaaaataattaaccaaaaactgattagaaagttcagtaataga--atctt 17854  T
Q  249 ttcttcctattcttacacaatgagtcaa 276  Q
    ||||||| ||||||||||||||||||||    
T  17853 ttcttcccattcttacacaatgagtcaa 17826  T

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Target: scaffold0070; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 17749 - 17704
Alignment:
Q  354 gagaggggatacaacataaatggatacaatacacacgatttacatg 399  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  17749 gagaggggatacaacataaatggatacagtacacacgatttacatg 17704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 18389 - 18361
Alignment:
Q  122 aatatatttttgtacttttgacacaagat 150  Q
    |||||||||||||||||||||||||||||    
T  18389 aatatatttttgtacttttgacacaagat 18361  T

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Target: scaffold0526 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 11191 - 11146
Alignment:
Q  152 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 197  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11191 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11146  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 11971279 - 11971234
Alignment:
Q  152 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 197  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11971279 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11971234  T

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