View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_high_21 (Length: 362)
Name: NF2138_high_21
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 17529716 - 17530002
Alignment:
| Q |
21 |
tgaatccaaagtaaaataacagatgaacaaacnnnnnnntggcaacaaaatcaactaaatctttgagccaaaaaattgtagttttggtcttgtgattgat |
120 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |
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| T |
17529716 |
tgaatccaaagtaaaataacagatgaacaaacaaaaaaatggcaacaaaatcaactaaatctttgagccaaaaaattgtagtttaggtcttgtaattggt |
17529815 |
T |
|
| Q |
121 |
attcctgattttattccttcccatcattgttgttgccacatgtgatgtttctattgcacttggcttctgggacattattgttgccaccattgccattttc |
220 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||| | |
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| T |
17529816 |
attcctgattttattccttcccatcattgttgtttccaaatgtgatgtttctgttgcacttggcttctgtgacattattgttgctaccattgctatttcc |
17529915 |
T |
|
| Q |
221 |
ttcgttgacattaatgttgcaattattattatcagcagcagcagtgttgttatttggctgagtatcaccaataatggaagtaacaacagc |
310 |
Q |
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| T |
17529916 |
ttcgttgacat---tgttgcaattattattatcagcaacaacaatgttgttgtttggctgagtatcaccaataatggaagtaacagcagc |
17530002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 344
Target Start/End: Original strand, 16856292 - 16856608
Alignment:
| Q |
21 |
tgaatccaaagtaaaataacagatgaacaaacnnnnnnntggcaacaaaatcaactaaatctttgagccaaaaaattgtagttttggtcttgtgattgat |
120 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||| |
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| T |
16856292 |
tgaatccaaagtaaaataacaattgaacaaa-aaaaaaatggcaacaaaat-aactaaatctttgagccaaaaaattgaagtttagctcttgtgattgat |
16856389 |
T |
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| Q |
121 |
at----tcctgattttattccttcccatcattgttgttgccacatgtgatgtttctattgcacttggcttctgggacattattgttgccaccattgccat |
216 |
Q |
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|| ||||| ||||||| |||||||||||||||| ||| || ||||||||||| ||| | ||| |||||| |||||||||||||| ||||||| || |
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| T |
16856390 |
atatattcctggttttatttcttcccatcattgttgctgctacctgtgatgtttccatttctattgtcttctgcgacattattgttgctaccattgttat |
16856489 |
T |
|
| Q |
217 |
tttcttcgttgacattaatgttgcaattattattatcagcagcagcagtgttgttatttggctgagtatcaccaataatggaagtaacaacagctgacaa |
316 |
Q |
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| T |
16856490 |
ttccttcggtgacat---ggttgtcgtcatgattatcagcagca------atgttatttagccgattataaccaataatggaagtaagagcagctaacaa |
16856580 |
T |
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| Q |
317 |
agttgcaggaaaatttggagtagcagca |
344 |
Q |
| |
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| T |
16856581 |
atctgcaggaaaatttggattagcagca |
16856608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 17514566 - 17514697
Alignment:
| Q |
21 |
tgaatccaaagtaaaataacagatgaacaaacnnnnnnntggcaacaaaatcaactaaatctttgagccaaaaaattgtagttttggtcttgtgattgat |
120 |
Q |
| |
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||||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||| |
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| T |
17514566 |
tgaatccaaagtaaaataacagatgaataaagataaaaattgaaacaaaatcaactaaatctttgagccataaaattgaagtttaggtcttgtaattgat |
17514665 |
T |
|
| Q |
121 |
attcctgattttattccttcccatcattgttg |
152 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
17514666 |
attcctgattttattccttcccatcattgttg |
17514697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 17514747 - 17514849
Alignment:
| Q |
242 |
attattattatcagcagcagcagtgttgttatttggctgagtatcaccaataatggaagtaacaacagctgacaaagttgcaggaaaatttggagtagca |
341 |
Q |
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||||||||||||||| ||| || | |||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| ||||| |
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| T |
17514747 |
attattattatcagctgcaacaacggtgttgtttggctgagtatcaccaatcttggaagtaagagtagctgacaaagttgcaggaaaatttggattagca |
17514846 |
T |
|
| Q |
342 |
gca |
344 |
Q |
| |
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||| |
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| T |
17514847 |
gca |
17514849 |
T |
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