View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_high_38 (Length: 255)
Name: NF2138_high_38
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 20191071 - 20191315
Alignment:
| Q |
1 |
gaaaggatttacattgtcaatcaattataattgtcgaatcgttagaaatgtttaacttttactataactatcttaaaagttagatatacgattggttgtg |
100 |
Q |
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| T |
20191071 |
gaaaggatttacattgtcaatcaattataattgtcgaatcgttagaaatgtttaacttttactataactatcttaaaagttagatatacgattggttgtg |
20191170 |
T |
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| Q |
101 |
attgtttgacagtgtaaataactttacatgacagtgtatcaaaattaaaatcttatgttttctcacgtagagatacttaagatagatggacacaaacact |
200 |
Q |
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| T |
20191171 |
attgtttgacagtgtagataactttacatgacagtgtaccaaaattaaaatcttatgttttcacacgtagagatacttaagatagatggacacaaacact |
20191270 |
T |
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| Q |
201 |
aaaattatatctatatgtagtgtagatttgttaattatgcctatg |
245 |
Q |
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| T |
20191271 |
aaaattatatctatatgtagtgtagatttgttaattatgcctatg |
20191315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 4865176 - 4865284
Alignment:
| Q |
8 |
tttacattgtcaatcaattataattgtcgaatcgttagaaatgtttaacttttactataactatcttaaaagttagatatacgattggttgtgattgttt |
107 |
Q |
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| T |
4865176 |
tttacattgtctatcaattataattgtcggatcatgaaaaatctg--agtttaattataactatcttaaaaatcacatatatgattggttgtgattgttt |
4865273 |
T |
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| Q |
108 |
gacagtgtaaa |
118 |
Q |
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| T |
4865274 |
gacagtgtaaa |
4865284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 4807242 - 4807343
Alignment:
| Q |
9 |
ttacattgtcaatcaattataattgtcgaatcgttagaaatgtttaacttttactataactatcttaaaagttagatatacgattggttgtgattgtttg |
108 |
Q |
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||||||||| ||| |||||||||||||| ||| || |||| ||| | ||| | |||||||||||||||||| | || | |||||||||||||| |||| |
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| T |
4807242 |
ttacattgttaataaattataattgtcggatcattgcaaatatttgagtttaattataactatcttaaaagtcacatgcatgattggttgtgattatttg |
4807341 |
T |
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| Q |
109 |
ac |
110 |
Q |
| |
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|| |
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|
| T |
4807342 |
ac |
4807343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 16979642 - 16979579
Alignment:
| Q |
92 |
ttggttgtgattgtttgacagtgtaaataactttaca-tgacagtgtatcaaaattaaaatctt |
154 |
Q |
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|||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||| |
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| T |
16979642 |
ttggttgtgatttgttgacagtgtaaatctttttacactgacagtgtatcaaaattaaactctt |
16979579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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