View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2138_high_4 (Length: 566)
Name: NF2138_high_4
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_high_4 |
 | |
|
| [»] scaffold0169 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 8342681 - 8343041
Alignment:
| Q |
10 |
catcatcacctaaactgatttgtccatgaagcatctgtctttctattataaactgatttgtattaatataagttacatctgttcgagtttcagagaaaac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8342681 |
catcatcacctaaactgatttgtccatgaagcatctgtctttctattataaactgatttgtattaatgtaagttacatctgttcgagtttcagagaaaac |
8342780 |
T |
|
| Q |
110 |
tttccctcttgaagtactcagatcaagttttctctgatgatttggctttactacaaagaggatatgggagcaaaacgtataatatgtattttgcatttca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8342781 |
tttccctcttgaagtactcagatcaagttttctctgatgatttggctttactacaaagaggatatgggagcaaaacgtataatatgtattttgcatttca |
8342880 |
T |
|
| Q |
210 |
tcaggttcaaaactctcttgtattttgacaactactatttatttccatatttttgtatattaatatcaggacatggtacacaaggaaaagttcttgaaat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8342881 |
tcaggttcaaaactctcttgtattttgacaactactatttatttccatatttttgtatattaatatcaggacatggtaaacaaggaaaagttcttgaaat |
8342980 |
T |
|
| Q |
310 |
tgtgtcctgttcttttgtgtagaacacgaaaagtcatctaagtatttgtctaattttcacc |
370 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8342981 |
tgtgtcttgttcttttgtgtagaacaagaaaagtcatctaagtatttgtctaattttcacc |
8343041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 362 - 534
Target Start/End: Original strand, 8343443 - 8343612
Alignment:
| Q |
362 |
attttcaccttaaaatatagatttttcaatcacttgcttatagtgccaaaatctcagtatatgtagccaagctaagcaatttcaactttgttgattagat |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8343443 |
attttcaccttaaaatatagatttttcaatcacttgcttatagtgccaaaatctcagtatatgtagccaagctaagcaatttcaactttgt---ttagat |
8343539 |
T |
|
| Q |
462 |
aacttaggtatgtggtgtagcaaatattcagatatccatatggataggaatatgataaagcttactcatatat |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8343540 |
aacttaggtatgtggtgtagcaaatattcagatatccatatggataggaatatgataaagcttactcagatat |
8343612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 356 - 458
Target Start/End: Original strand, 25661 - 25758
Alignment:
| Q |
356 |
tgtctaattttcaccttaaaatatagatttttcaatcacttgcttatagtgccaaaatctcagtatatgtagccaagctaagcaatttcaactttgttga |
455 |
Q |
| |
|
||||| ||| |||||||||| |||| | |||||||| |||||||||||||||| | ||||||||||||| ||||||||| || ||||||| ||||| |
|
|
| T |
25661 |
tgtcttattctcaccttaaagtataaacttttcaataacttgcttatagtgcccacatctcagtatatg-----aagctaagccatatcaacttcgttga |
25755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University