View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_high_46 (Length: 247)
Name: NF2138_high_46
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 42158913 - 42158698
Alignment:
| Q |
20 |
ctgaattggtttcaaacttcatcgcttctcatggctccgaagtaactctgcctactttcaagtctcctgaagtgaagggcttggcatacacaaccttggc |
119 |
Q |
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| T |
42158913 |
ctgatttggtttcaaacttcatcgcttctcatggctccgaaataactctgcctactttcaagtctcctgaagtgaagggcttggcatacacaaccttggc |
42158814 |
T |
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| Q |
120 |
ggaacttttacttcttctcaaaaaccattcaatcttagatctccttgacaatcaacgctctctactcgttaagttacttgaagatcttcaccatacattt |
219 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42158813 |
ggaacttttacttcttctcaagaaccattcaatcttagatctccttgacaatcaacgctttctactcgttaagttacttgaagatcttcaccatacattt |
42158714 |
T |
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| Q |
220 |
cgttttcgtggacctt |
235 |
Q |
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|||||||||||||||| |
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| T |
42158713 |
cgttttcgtggacctt |
42158698 |
T |
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