View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_high_5 (Length: 532)
Name: NF2138_high_5
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 10 - 516
Target Start/End: Original strand, 46644139 - 46644647
Alignment:
| Q |
10 |
catcatcagatgcatgttcaatgaaagtatcaaaatcattctgctcaaaggacaccatctgccaagaaaaataggaaaacaaaccagataactaaacact |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46644139 |
catcatcagatgcatgttcaatgaaagtatcaaaatcattctgctcaaaggacaccatctgccaagaaaaataggaaaacaaaccagataactaaacact |
46644238 |
T |
|
| Q |
110 |
caaatgatggcttaagaagaaatgttataaaggaaatttagattagataacatcatcaagaacatacttcaagcttgagttgtaagttgtaaccaagcat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46644239 |
caaatgatggcttaagaagaaatgttataaaggaaatgtagattagataacatcatcaagaacatacttcaagcttgagttgtaa-------ccaagcat |
46644331 |
T |
|
| Q |
210 |
aaaagtaataatatacagtattactcactacttattcatacttaatgaagca-ctcagatttcaaaactatgagtatccaactatgccaaggaactgata |
308 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46644332 |
aaaagtaataataaacagtattactcactacttattcatacttaatgaagcaactcagatttcaaaactatgagtatccaactatgccaaggaactgata |
46644431 |
T |
|
| Q |
309 |
ccatgttttctttctaactttacaaccctttgcctattaattatctaacaaaatattagatctcaaatgttttcacattaaaaactatcgatgaactcag |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46644432 |
ccatgttttctttctaactttacaaccctttgcctattaattatctaacaaaatattagatctcaaatgttttcacattaacaactatcgatgaactcag |
46644531 |
T |
|
| Q |
409 |
gatatcagaatacaaaaattggcaatatgatctgaaaaatgaaaacccttacttcaacatggttac--------ctcacataaaaactattatgaagcac |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46644532 |
gatatcagaatacaaaaattggcaatatgatctgaaaaatgaaaacccttacttcaacatggttacctaaacaactcacataaaaactattatgaagcac |
46644631 |
T |
|
| Q |
501 |
ggacactccacatatc |
516 |
Q |
| |
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|||||||||||||||| |
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| T |
46644632 |
ggacactccacatatc |
46644647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 46636178 - 46636029
Alignment:
| Q |
30 |
atgaaagtatcaaaatcattctgctcaaaggacaccatctgccaagaaaaataggaaaacaaa-ccagataactaaacactcaaatgatggcttaagaag |
128 |
Q |
| |
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|||||| ||||| || |||||| | ||||||||||||||||||||||| ||||||||||||| |||||||| |||| ||| |||| ||||||||||| |
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| T |
46636178 |
atgaaaatatcattataattctggttaaaggacaccatctgccaagaaatataggaaaacaaaaccagataattaaagactaaaatcgcggcttaagaag |
46636079 |
T |
|
| Q |
129 |
aaatgttataaaggaaatttagattagataacatcatcaagaacatactt |
178 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||| ||||||| |
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| T |
46636078 |
aaatgttataaaggaaatgtagattagattacatcatcaagagcatactt |
46636029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 46617463 - 46617332
Alignment:
| Q |
47 |
attctgctcaaaggacaccatctgccaagaaaaataggaaaacaaa-ccagataactaaacactcaaatgatggcttaagaagaaatgttataaaggaaa |
145 |
Q |
| |
|
|||||| | |||||||||||||||| |||||| |||| |||||||| ||||||||||||| | |||||| ||| ||||||||||||| |||||||||||| |
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|
| T |
46617463 |
attctggttaaaggacaccatctgcaaagaaatatagtaaaacaaaaccagataactaaagagtcaaatcatgccttaagaagaaat-ttataaaggaaa |
46617365 |
T |
|
| Q |
146 |
tttagattagataacatcatcaagaacatactt |
178 |
Q |
| |
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| ||||||||||||||||||||||| ||||||| |
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| T |
46617364 |
tgtagattagataacatcatcaagagcatactt |
46617332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 476
Target Start/End: Complemental strand, 46628760 - 46628705
Alignment:
| Q |
421 |
caaaaattggcaatatgatctgaaaaatgaaaacccttacttcaacatggttacct |
476 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| |
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|
| T |
46628760 |
caaaaattggcaatacgatctgaaacatcaaaaccctcacttcaacatggttacct |
46628705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 46628852 - 46628790
Alignment:
| Q |
30 |
atgaaagtatcaaaatcattctgctcaaaggacaccatctgccaagaaaaataggaaaacaaa |
92 |
Q |
| |
|
|||||| ||||| || |||||||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
46628852 |
atgaaaatatcattataattctgcttaaagaacaccatctgccaagaaaaataggaaaacaaa |
46628790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 423 - 476
Target Start/End: Complemental strand, 46616574 - 46616521
Alignment:
| Q |
423 |
aaaattggcaatatgatctgaaaaatgaaaacccttacttcaacatggttacct |
476 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||| ||||||||| |||||||| |
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|
| T |
46616574 |
aaaattggcaatacgatctgaaacatcaaaaccctcacttcaacacggttacct |
46616521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 46617220 - 46617192
Alignment:
| Q |
265 |
agatttcaaaactatgagtatccaactat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
46617220 |
agatttcaaaactatgagtatccaactat |
46617192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 18376269 - 18376390
Alignment:
| Q |
69 |
tgccaagaaaaataggaaaacaaa-ccagataactaaacactcaaatgatggcttaagaagaaatgttataaaggaaatttagattagataacatcatca |
167 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
18376269 |
tgccaagaaaaataggaaaacaaaaccagataattaaacactcaaatcatggcttaagacgaaat-ttataaaggaaatgtagattagataacatcatct |
18376367 |
T |
|
| Q |
168 |
agaacatacttcaagcttgagtt |
190 |
Q |
| |
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||| |||||||||||| |||||| |
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|
| T |
18376368 |
agagcatacttcaagcatgagtt |
18376390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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