View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_high_50 (Length: 237)
Name: NF2138_high_50
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6220758 - 6220978
Alignment:
| Q |
1 |
atttatgaatgcataaccattccaattggtcaagatctttttaaacaaaattggagtatctctagttaaagttaaggtgaaccagcctatactgtattct |
100 |
Q |
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| T |
6220758 |
atttatgaatgcataactattccaattggtcaagatctttttaaacaaaattggagtatctctagttaaagttaaggtgaaccagcctatactgtattct |
6220857 |
T |
|
| Q |
101 |
aatcctatcctaatcctaatgaaataatggtgaattagtcaggtatactagtaatgaagacatgattagtcttccatgcatctttaatatgattctggtt |
200 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6220858 |
aatcctatcctaatcctaatgatataatggtaaattagtcaggtatactagtaatgaagacatgattagacttccatgcatctttaatatgattctggtt |
6220957 |
T |
|
| Q |
201 |
gtgagaaggtaacataacatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
6220958 |
gtgagaaggtaacataacatt |
6220978 |
T |
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