View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2138_high_57 (Length: 229)

Name: NF2138_high_57
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2138_high_57
NF2138_high_57
[»] chr3 (2 HSPs)
chr3 (1-228)||(9173427-9173660)
chr3 (177-229)||(9172378-9172430)
[»] chr2 (1 HSPs)
chr2 (1-147)||(2203622-2203768)
[»] chr7 (3 HSPs)
chr7 (1-147)||(15897257-15897403)
chr7 (185-225)||(8578624-8578664)
chr7 (177-229)||(31238850-31238902)
[»] chr5 (1 HSPs)
chr5 (17-147)||(18860745-18860875)
[»] chr1 (1 HSPs)
chr1 (1-129)||(24319794-24319922)
[»] chr8 (1 HSPs)
chr8 (1-116)||(12298013-12298128)
[»] chr6 (1 HSPs)
chr6 (99-148)||(28654247-28654296)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 9173427 - 9173660
Alignment:
Q  1 agaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaatt 100  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||| |||||||    
T  9173427 agaacttcttgtagagaataatacacttcattctaatccagaattgaagatgcacctgaatttagagaagcatggtagagaagtttatcctcgtgaaatt 9173526  T
Q  101 ttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggggcttataattcat------gtgtaagtgcatgtgtgaatggaaaatgagaat 194  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      |||| |||| ||| |||||||||||||||||||    
T  9173527 ttttatatattttagaaggagttgtggagtgcatgtgtagattgtggggcttataattcatgtgtgagtgtgagtgtatgcgtgaatggaaaatgagaat 9173626  T
Q  195 ggcacatgactaacttaaatgatgttttaatctc 228  Q
    |||||||||||||||||| |||||||||||||||    
T  9173627 ggcacatgactaacttaagtgatgttttaatctc 9173660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 9172430 - 9172378
Alignment:
Q  177 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctca 229  Q
    ||||||| |||||  ||||||||||||||||||||| ||||||||||||||||    
T  9172430 tgaatgggaaatggaaatggcacatgactaacttaagtgatgttttaatctca 9172378  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 2203622 - 2203768
Alignment:
Q  1 agaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaatt 100  Q
    ||||||| |||| || |||||||||||||||||||||| ||||||||| |||||| ||||||||||||| || ||||||||||||||| |||||||||      
T  2203622 agaactttttgctgataataatacacttcattctaatccagaattgaatatgcacatgaatttagagaagcacgctagagaggtttatactcatgaaaac 2203721  T
Q  101 ttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 147  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  2203722 ttttacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg 2203768  T

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Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 15897403 - 15897257
Alignment:
Q  1 agaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaatt 100  Q
    ||||||| |||| || |||||||||||||||||||||| | |||||||||||||| ||||||||||||| || ||||||||||||||| |||| ||||      
T  15897403 agaactttttgctgataataatacacttcattctaatccataattgaagatgcacatgaatttagagaagcacgctagagaggtttatactcacgaaaac 15897304  T
Q  101 ttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 147  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  15897303 ttttacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg 15897257  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 8578664 - 8578624
Alignment:
Q  185 aaatgagaatggcacatgactaacttaaatgatgttttaat 225  Q
    ||||||||||| |||||||||||||||| | ||||||||||    
T  8578664 aaatgagaatgacacatgactaacttaagttatgttttaat 8578624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 31238850 - 31238902
Alignment:
Q  177 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctca 229  Q
    ||||||| | |||| ||| |||||||||| |||||| ||||||||||||||||    
T  31238850 tgaatggcacatgacaatagcacatgactcacttaagtgatgttttaatctca 31238902  T

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Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 18860745 - 18860875
Alignment:
Q  17 aataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaattttttatatatttcaga 116  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |||| ||||  ||||| |||||||| |    
T  18860745 aataatacacttcattctaatccagaattgaagatgcacatgaatttagagaaccacgctagagaggtttatactcacgaaaacttttacatatttcaaa 18860844  T
Q  117 aggagttgtggagtgcatgtgtagattgtgg 147  Q
    || ||||||||||||||||||||||||||||    
T  18860845 agaagttgtggagtgcatgtgtagattgtgg 18860875  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 24319794 - 24319922
Alignment:
Q  1 agaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaatt 100  Q
    ||||||| |||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||| |||| ||||      
T  24319794 agaactttttgctgataataatacacttcattctaatccagaattgaagatgcacatgaatttagagaagcacgctagagaggtttatactcacgaaaaa 24319893  T
Q  101 ttttatatatttcagaaggagttgtggag 129  Q
    ||||| |||||||| ||||||||||||||    
T  24319894 ttttacatatttcaaaaggagttgtggag 24319922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12298128 - 12298013
Alignment:
Q  1 agaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaatt 100  Q
    ||||||||| ||||| |||  |||||||||||||| || || ||||||||||||| || |||||||||| |||| ||||||| ||||| ||||||||| |    
T  12298128 agaacttctggcagataatgctacacttcattctattccagcattgaagatgcacgtggatttagagaagcatggtagagagatttatactcatgaaaat 12298029  T
Q  101 ttttatatatttcaga 116  Q
    ||||| ||||||||||    
T  12298028 ttttacatatttcaga 12298013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 28654296 - 28654247
Alignment:
Q  99 ttttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggg 148  Q
    ||||||| ||||||  || |||||||||||||||||||||||||||||||    
T  28654296 ttttttaaatattttggagggagttgtggagtgcatgtgtagattgtggg 28654247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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