View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2138_high_6 (Length: 507)

Name: NF2138_high_6

Description: NF2138

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2138_high_6

[»] scaffold0085 (1 HSPs)

Alignment Details

Target: scaffold0085 (Bit Score: 358; Significance: 0; HSPs: 1)

Name: scaffold0085

Description:

Target: scaffold0085; HSP #1

Raw Score: 358; E-Value: 0

Query Start/End: Original strand, 7 - 490

Target Start/End: Original strand, 34210 - 34704

Alignment:

Q	7	tcgaagaaaatttcacttatggacaaattaacgctcaagccaagtgtgtaaagaattgaaaggtaaaaatattaataattgtgacggttggaacgacggt	106	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	34210	tcgaacaaaatttcacttatggacaaattaacgcccaagtcaagtgtataaagaattgaaaggtaaaaatattgataattgtgacggttggaacggcggt	34309	T

Q	107	ttacataaccatcttatgaagttggtttgcgacatacgatctacaaccgttgcagatgcaaaatatcgacagtcggatttggaattgctgccgcaatatt	206	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34310	ttacaaaaccatcttatgaagttggtttgcgacataagatctacaaccgttgcagatgcaaaatatcgacagtcaggttcggaatcgctgccgcaatatt	34409	T

Q	207	tcagttttcttgtagcgttatgcatgtttgttcattaagcaggagctataagacctcctaagtctcataaagacattctaagcatttcaagtgttttatg	306	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34410	tcagttttcttgtagcgttatgcatgtttgttcattaagcaggagctataagacctcctaagtctcataaagacattctaagcatttcaagtgttttatg	34509	T

Q	307	tcaatgagttttgcaaccaaaagttgttagttgttcttttaggaaaaagaatgtatagtagtgatagaaatcgagatctaaaactgtannnnnnnnnnnn	406	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34510	tcaatgagttttgcaaccaaaagttgttagttgttcttttaggaaaaagaatgtatagtagtgatagaaatcgagatctaaaactgtatttttttagact	34609	T

Q	407	nnnnnctcgacacaaatacctactt-----------aataaaggggaggggacaatgccactttatgctcatcatgaagagatgggagtgaacat	490	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34610	tttttctcgacacaaatacctactttcattgagaaaaataaaggggaggggacaatgccactttatgctcatcatgaagagatgggagtgaacat	34704	T

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