View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_high_8 (Length: 453)
Name: NF2138_high_8
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 29401494 - 29401073
Alignment:
| Q |
16 |
atcgatagagctgaccgttatgactagttactataccaggtaatattgctatagaatgtaccaacctcaccgattcccataaaggcgcgcataattagca |
115 |
Q |
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| T |
29401494 |
atcgatagagctgaccgctatgactagttactataccaggtaatattgctatagaatgtaccaacctcaccgattcccataaaggcgcgcataattagca |
29401395 |
T |
|
| Q |
116 |
aataaggtagcccaattcttgcagaaataggtgttaaaattgttgccattgaccaccatacaactccaaatcctagcactaccttcccaccaagtttgtc |
215 |
Q |
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| T |
29401394 |
aataaggtagcccaattcttgcagcaataggtgttaaaattgttgccattgaccaccatacaactccaaatcctagcactaccttcccaccaagtttgtc |
29401295 |
T |
|
| Q |
216 |
tgcccatataccaccaagaatctaaagaagaaataaaccatcataacataacaatgttatgctaggttactgcagatatgaaatcaattcttgttaggct |
315 |
Q |
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| T |
29401294 |
tgcccatataccaccaagaatctaaagaagaaataaaccatcataacataacaatgttatgctaggttactgaagatatgaaatcaattcttgttaggct |
29401195 |
T |
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| Q |
316 |
aatgtgatctatgaagtgcgcatagcaatcgcacctgagtaagtagatagccccagaaaaaagatgactgaattaagccaactgttgcactgttccagtt |
415 |
Q |
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| T |
29401194 |
aatgtgatctatgaagtgcgcatagcaatcacacctgagtaagtagataaccccagaaaaaagatgactgaattaagccaactgttgcactgttccagtt |
29401095 |
T |
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| Q |
416 |
aaactcttgtgacattggaagt |
437 |
Q |
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| T |
29401094 |
aaactcttgtgacattggaagt |
29401073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 11320013 - 11320169
Alignment:
| Q |
75 |
accaacctcaccgattcccataaaggcgcgcataattagcaaataaggtagcccaattcttgcagaaataggtgttaaaattgttgccattgaccaccat |
174 |
Q |
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||||||||| || |||||||||||||| ||||||| |||| ||| |||||||||| | |||||| |||||| ||||||| |||||| |||||||||||| |
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| T |
11320013 |
accaacctcgccaattcccataaaggcacgcataacaagcagatatggtagcccaagttttgcagcaataggagttaaaactgttgcaattgaccaccat |
11320112 |
T |
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| Q |
175 |
acaactccaaatcctagcactaccttcccaccaagtttgtctgcccatataccacca |
231 |
Q |
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| T |
11320113 |
acaactccaaaacccagtactagcttcccaccaactttgtctgcccatatgccacca |
11320169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 11320415 - 11320504
Alignment:
| Q |
348 |
acctgagtaagtagatagccccagaaaaaagatgactgaattaagccaactgttgcactgttccagttaaactcttgtgacattggaagt |
437 |
Q |
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| T |
11320415 |
acctgtgtgagtagataaccccagaaaaaagaggactgaatgaggccaactgttgcactgttccagttgaactgttgagacattggaagt |
11320504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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