View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_1 (Length: 610)
Name: NF2138_low_1
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 36792898 - 36792284
Alignment:
| Q |
1 |
tgggagagcctaatatgtttgggcggctataaaacttacaaccctactgcttgaagcagaatcatcatacacttacccctataatttttaattaaacagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
36792898 |
tgggagagcctaatatgtttgggcggctataaaacttacaaccctactgcttgaagcagaatcatcatacacttacacctataatttttaattaaatagt |
36792799 |
T |
|
| Q |
101 |
atagtctaaaaactacnnnnnnnnnnnnnn---aataaagtagtctaaaaattatatagtagtttaatcagaaggaataatttatgtggaaac------- |
190 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36792798 |
atagtctaaaaactacttcttttttttgttttgaataaagtagtctaaaaattatatagtagtttaatcagaaggaataatttatgtggaaacaaagaat |
36792699 |
T |
|
| Q |
191 |
-----------catattacagggttcatannnnnnnnnnaaggaatattacagggtccatgatagacaaatagttgagaaatatcaaatggaaaaactaa |
279 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36792698 |
gcgcgtcacaccatattacagggttcattttttttttggaaggaatattacagggttcatgatagacaaatagttgagaaatatcaaatgaaaaaactaa |
36792599 |
T |
|
| Q |
280 |
agagaaacaaattatttcggtacactaaaaaagtcttacatttttatttgaaaatcgaagctacgagtcgtttatgtgaaacactctcactttattcacc |
379 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36792598 |
agagaaacaaattatttcggtacattaaaaaagtcttacattgttatatgagaatcgaagctacgagtcgtttatgtgaaacactctcactttattcacc |
36792499 |
T |
|
| Q |
380 |
gcgacgtcttacacacaagacctaaataagacaatatctaaaaaacgtagtatcttgaacttaatgtcgaaacattgatacttcagacatgggtcgtacc |
479 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
36792498 |
gcgatgtcttacacacaagacctaaataagacaatatctaaaaaacgtagtatcttgaacttaatgtcgaaatattgacacttcagacatgggtcgtacc |
36792399 |
T |
|
| Q |
480 |
tatcccacactcgatcaagggatgacatgctctatatccctttaactttgactcgggggctactatttgagaatcgaggttgatgaaagtttatagacaa |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36792398 |
tatcccacactcgatcaagggatgacatgctctatatccctttaactttgactcgggagctactatttgagaatcgaggttgatgaaagtttatagacaa |
36792299 |
T |
|
| Q |
580 |
aacacactttggtcg |
594 |
Q |
| |
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||||||| |||||| |
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| T |
36792298 |
cacacactctggtcg |
36792284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 236 - 464
Target Start/End: Complemental strand, 36786173 - 36785944
Alignment:
| Q |
236 |
ccatgatagacaaatagttgagaaatatcaaatggaaaaactaaagagaaacaaattatttcggtacactaaaa-aagtcttacatttttatttgaaaat |
334 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| |||||| | ||| |||||||| |||||||||||| |||| ||| || |||||| | ||| |
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| T |
36786173 |
ccatgagagacaaagggttgagaaatatcaaataacaaaacttttaatgaactaattattttggtacactaaaacaagttctactttgttattttagaat |
36786074 |
T |
|
| Q |
335 |
cgaagctacgagtcgtttatgtgaaacactctcactttattcaccgcgacgtcttacacacaagacctaaataagacaatatctaaaaaacgtagtatct |
434 |
Q |
| |
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|||||||| | | |||||| |||||||||| |||||||| || | || | | |||||||||| |||||| ||||||||||| |||||||| || ||| |
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| T |
36786073 |
agaagctactaatagtttatatgaaacactcacactttatccatcatgatgattcacacacaagatctaaattagacaatatctcaaaaacgtggtgtct |
36785974 |
T |
|
| Q |
435 |
tgaacttaatgtcgaaacattgatacttca |
464 |
Q |
| |
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|| |||||||||||||||||| | |||||| |
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|
| T |
36785973 |
tggacttaatgtcgaaacattaacacttca |
36785944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 36786303 - 36786263
Alignment:
| Q |
150 |
tatatagtagtttaatcagaaggaataatttatgtggaaac |
190 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
36786303 |
tatatagtagtttaatcataaggtataatttatgtggaaac |
36786263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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