View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2138_low_13 (Length: 411)

Name: NF2138_low_13
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2138_low_13
NF2138_low_13
[»] chr4 (38 HSPs)
chr4 (1-401)||(48891067-48891466)
chr4 (261-401)||(48852577-48852720)
chr4 (7-297)||(7773951-7774243)
chr4 (201-307)||(37827109-37827215)
chr4 (214-315)||(7237827-7237928)
chr4 (1-148)||(49041415-49041558)
chr4 (214-308)||(48898586-48898680)
chr4 (1-62)||(48156786-48156847)
chr4 (206-297)||(45372194-45372285)
chr4 (340-398)||(48170592-48170653)
chr4 (1-59)||(45372419-45372477)
chr4 (1-57)||(7771062-7771118)
chr4 (7-63)||(7904696-7904752)
chr4 (255-307)||(48875754-48875806)
chr4 (1-60)||(7907983-7908042)
chr4 (1-60)||(50251169-50251228)
chr4 (1-57)||(7789747-7789803)
chr4 (1-60)||(7238081-7238140)
chr4 (1-63)||(48170944-48171009)
chr4 (1-59)||(48862899-48862960)
chr4 (253-307)||(7877632-7877686)
chr4 (332-393)||(45372107-45372171)
chr4 (90-132)||(45385074-45385116)
chr4 (218-312)||(48170690-48170784)
chr4 (255-297)||(48870450-48870492)
chr4 (255-297)||(48886136-48886178)
chr4 (261-307)||(49044311-49044357)
chr4 (7-56)||(7877384-7877433)
chr4 (367-400)||(7877749-7877782)
chr4 (367-400)||(7908345-7908378)
chr4 (2-146)||(48852316-48852462)
chr4 (248-297)||(48863130-48863179)
chr4 (1-62)||(48875504-48875565)
chr4 (1-53)||(48870200-48870252)
chr4 (1-53)||(48885886-48885938)
chr4 (255-315)||(50250897-50250957)
chr4 (342-401)||(50669047-50669109)
chr4 (261-297)||(50672412-50672448)
[»] chr6 (2 HSPs)
chr6 (214-363)||(21015673-21015822)
chr6 (255-315)||(21979757-21979817)
[»] chr3 (5 HSPs)
chr3 (114-297)||(47452032-47452221)
chr3 (248-400)||(11015544-11015693)
chr3 (320-401)||(11024555-11024639)
chr3 (252-401)||(11005980-11006126)
chr3 (80-148)||(11006236-11006304)
[»] chr7 (1 HSPs)
chr7 (199-401)||(48883650-48883855)
[»] chr8 (6 HSPs)
chr8 (249-389)||(12200206-12200349)
chr8 (249-389)||(12444634-12444777)
chr8 (1-63)||(15348520-15348582)
chr8 (1-48)||(12199965-12200012)
chr8 (1-48)||(12444393-12444440)
chr8 (4-60)||(4032277-4032333)
[»] chr5 (4 HSPs)
chr5 (206-314)||(42562439-42562547)
chr5 (1-63)||(29687709-29687771)
chr5 (261-314)||(29712574-29712627)
chr5 (7-59)||(1812089-1812141)
[»] chr1 (3 HSPs)
chr1 (7-59)||(24309841-24309893)
chr1 (1-44)||(24322120-24322163)
chr1 (248-297)||(24310084-24310133)
[»] scaffold0508 (1 HSPs)
scaffold0508 (1-59)||(11920-11978)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 48891067 - 48891466
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttaccgcccccaacacacacactcagaattctgctcatatcaact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  48891067 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttaccgcccccaacacacac--tcagaattctgctcatatcaact 48891164  T
Q  101 tcagctcctaaaattcgatctatagatttagaagt-atcgcttaacgattttagtgcttctgcttcattgaacatcaatttcttgcatccccaatcttat 199  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48891165 tcagctcctaaaattcgatctatagatttagaagttatcgcttaacgattttagtgcttctgcttcactgaacatcaatttcttgcatccccaatcttat 48891264  T
Q  200 tttcatattaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||      
T  48891265 tttcatattaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctatgtatggaatccatccactggacttcacaaacaaatacctt 48891364  T
Q  300 tgtctcctattgattcgaggttagatgccaactatttatattatctatatggttttaggtatgagttaagagatgattacttggtggtttcagtgtccta 399  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48891365 tgtctcctattgattcgaggttagatgccaactatttatgttatctatatggttttaggtatgagttaagagatgattagttggtggtttcagtgtccta 48891464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 261 - 401
Target Start/End: Original strand, 48852577 - 48852720
Alignment:
Q  261 tatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattcgaggttagatgccaactatttatattatctatatggttttaggta 360  Q
    |||||||||||||||| ||| ||||||||||||||||  ||||||| ||||||||||||||||||| ||  ||||| | |||||||||||||||| ||||    
T  48852577 tatggaatccatccaccggagttcacaaacaaatacctttgtctcccattgattcgaggttagatggcacatatttctgttatctatatggttttgggta 48852676  T
Q  361 tga---gttaagagatgattacttggtggtttcagtgtcctatg 401  Q
    |||   || ||  |||||||||||||| |||| | |||||||||    
T  48852677 tgacccgtcaaccgatgattacttggtagttttaatgtcctatg 48852720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 7774243 - 7773951
Alignment:
Q  7 tggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttaccgcccccaacacacacactcagaattctgctcatatcaacttcagct 106  Q
    |||||||||||| |||| ||||| |||||||||||||| ||||||||||| ||| || | ||| ||||| |  |||||| ||  ||||||| ||  | ||    
T  7774243 tggttttctcttatctctgatccccattttgcaaattcacattttcaactcaccaccac-aacgcacactcctagaattatgtgcatatcatctctatct 7774145  T
Q  107 cctaaaattcgatctatagatttagaagtatcgcttaacgattttagtgcttctgcttcattgaacatcaatttcttgcatccccaatcttattttc--- 203  Q
    | | ||||||||||||||| ||| |||| ||  |||||||||  |   | | |||||||| ||||| | ||||| | || |||  ||||||||||||       
T  7774144 catgaaattcgatctataggttttgaagcatttcttaacgatgat---gatactgcttcagtgaaccttaatttttcgcttccagaatcttattttccgg 7774048  T
Q  204 ---atattaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 297  Q
       | |||| || ||| |||||||||||| |||||||| ||  | || ||||||||||| |||||||||||||||||||| || | |||||||||||    
T  7774047 ctgaaattagaggttcgtgtagagggtttatacttttgtatcgtgacccaaacatctacatatggaatccatccactggatttaaaaaacaaatacc 7773951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 37827215 - 37827109
Alignment:
Q  201 ttcatattaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaat 300  Q
    |||| ||||||| |||| |||||||||||||| |||||||   |   | |||||||||| |||||||||||||||||||| ||||||||||||||||  |    
T  37827215 ttcaaattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaataccctt 37827116  T
Q  301 gtctcct 307  Q
    |||||||    
T  37827115 gtctcct 37827109  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 7237928 - 7237827
Alignment:
Q  214 ttcatgtagagggtttgtacttttgcatactaact--caaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattg 311  Q
    |||||||||||||||| ||||||||  ||| |||   |||||||||||||||||||||||||||||||| || | |||||||||||  |||||||| |||    
T  7237928 ttcatgtagagggtttatacttttg--taccaacctccaaacatctacgtatggaatccatccactggatttaaaaaacaaatacccgtgtctccttttg 7237831  T
Q  312 attc 315  Q
    ||||    
T  7237830 attc 7237827  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 49041558 - 49041415
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttaccgcccccaacacacacactcagaattctgctcatatcaact 100  Q
    |||||||||||||||||| |||| ||||| |||||||||||||| |||||| |||||||| |||||||| ||||  |  |||||| || |||    ||||    
T  49041558 aagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaacttacc-cccccaacccacaaccgtagaattttgttca---gaact 49041463  T
Q  101 tcagctcctaaaattcgatctatagatttagaagtatcgcttaacgat 148  Q
    ||| || || ||||||| |||||||||||||||| |||| || |||||    
T  49041462 tcaacttctgaaattcgttctatagatttagaagcatcgattcacgat 49041415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 48898586 - 48898680
Alignment:
Q  214 ttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctccta 308  Q
    |||||||||||| ||| ||||||||||||||  |||| | ||| || |||||||||||||||| |||  |||||||||||||||  |||||||||    
T  48898586 ttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttgtctccta 48898680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48156847 - 48156786
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttaccgc 62  Q
    |||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||||||    
T  48156847 aagtcttggttttctcttatctccgatactcattttgcaaattctcattttcaaattaccgc 48156786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 297
Target Start/End: Complemental strand, 45372285 - 45372194
Alignment:
Q  206 attaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 297  Q
    ||||||| |||||||||||||||| || ||||||||  ||| |||| | ||||  |||||||||||||||||||  |||| |||||||||||    
T  45372285 attaaaggttcatgtagagggtttatatttttgcatggtaattcaaccttctatctatggaatccatccactggtgttcagaaacaaatacc 45372194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 48170653 - 48170592
Alignment:
Q  340 ttatctatatggttttaggtatga---gttaagagatgattacttggtggtttcagtgtcct 398  Q
    |||||||||||||||| |||||||   |||||||||||||||||| ||||||||||||||||    
T  48170653 ttatctatatggttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcct 48170592  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45372477 - 45372419
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttac 59  Q
    ||||||||||||||| || |||| |||||||||||||||||||| ||||||||| ||||    
T  45372477 aagtcttggttttctattatctctgatcctcattttgcaaattcacattttcaaattac 45372419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7771062 - 7771118
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaactt 57  Q
    |||||||||||||||||| |||| |||||||| |||| |||||| ||||||||||||    
T  7771062 aagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaactt 7771118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 7904696 - 7904752
Alignment:
Q  7 tggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttaccgcc 63  Q
    |||||||||||| |||| |||||||| ||||||||||| ||||||||||| ||||||    
T  7904696 tggttttctcttatctctgatcctcactttgcaaattcacattttcaactcaccgcc 7904752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 48875754 - 48875806
Alignment:
Q  255 tctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcct 307  Q
    ||||| |||||||||||||||| ||| |||||||||||||||| |||||||||    
T  48875754 tctacctatggaatccatccaccggatttcacaaacaaatacctatgtctcct 48875806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7907983 - 7908042
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttacc 60  Q
    ||||| |||||||||||| |||| | ||| |||||||||||||| |||||||||||||||    
T  7907983 aagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaacttacc 7908042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 50251228 - 50251169
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttacc 60  Q
    |||||||||||||||||| |||| ||||| || | |||||||| ||||||||||||||||    
T  50251228 aagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 50251169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7789747 - 7789803
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaactt 57  Q
    ||||||||||||||| || |||| |||||||| |||| |||||| ||||||||||||    
T  7789747 aagtcttggttttcttttatctccgatcctcactttgaaaattcacattttcaactt 7789803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7238140 - 7238081
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttacc 60  Q
    |||||||||||||||||| |||| || ||||| ||||||||||| ||||| |||| ||||    
T  7238140 aagtcttggttttctcttatctctgaccctcactttgcaaattcacatttccaacatacc 7238081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 48171009 - 48170944
Alignment:
Q  1 aagtcttggttttctcttgtctca---gatcctcattttgcaaattcgcattttcaacttaccgcc 63  Q
    |||||||||||| ||||| ||||    |||||||| ||||||||||||||||||||| ||||||||    
T  48171009 aagtcttggtttgctcttatctctcatgatcctcactttgcaaattcgcattttcaaattaccgcc 48170944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 48862899 - 48862960
Alignment:
Q  1 aagtcttggttttctcttgtctca---gatcctcattttgcaaattcgcattttcaacttac 59  Q
    |||||||||||||||||| ||||    |||||||| ||||||||||| ||||||||||||||    
T  48862899 aagtcttggttttctcttatctctcatgatcctcactttgcaaattcacattttcaacttac 48862960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 7877632 - 7877686
Alignment:
Q  253 catctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcct 307  Q
    ||||||| |||||||||||||||||||| || | |||||||||||  ||||||||    
T  7877632 catctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctcct 7877686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 393
Target Start/End: Complemental strand, 45372171 - 45372107
Alignment:
Q  332 tatttatattatctatatggttttaggtatga---gttaagagatgattacttggtggtttcagt 393  Q
    ||||| |||||||  ||||| ||| |||||||   ||||||||||||||||||||||||||||||    
T  45372171 tatttctattatccctatggatttgggtatgatgagttaagagatgattacttggtggtttcagt 45372107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 45385116 - 45385074
Alignment:
Q  90 tcatatcaacttcagctcctaaaattcgatctatagatttaga 132  Q
    |||||||||||||||||| ||||  ||||||||||||||||||    
T  45385116 tcatatcaacttcagctcgtaaatctcgatctatagatttaga 45385074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 312
Target Start/End: Complemental strand, 48170784 - 48170690
Alignment:
Q  218 tgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattga 312  Q
    |||||||| ||| || ||||||||  ||| ||||   ||||| ||||||||||||||||  || |||| |||||||||||  |||||||||||||    
T  48170784 tgtagaggctttatatttttgcatcataattcaagtttctacctatggaatccatccacccgagttcataaacaaatacctttgtctcctattga 48170690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 48870450 - 48870492
Alignment:
Q  255 tctacgtatggaatccatccactggacttcacaaacaaatacc 297  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||    
T  48870450 tctacctatggaatccatccaccggatttcacaaacaaatacc 48870492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 48886136 - 48886178
Alignment:
Q  255 tctacgtatggaatccatccactggacttcacaaacaaatacc 297  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||    
T  48886136 tctacctatggaatccatccaccggatttcacaaacaaatacc 48886178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 49044357 - 49044311
Alignment:
Q  261 tatggaatccatccactggacttcacaaacaaataccaatgtctcct 307  Q
    ||||||||||||||||| || ||||||||||||||||  ||||||||    
T  49044357 tatggaatccatccactagagttcacaaacaaatacctttgtctcct 49044311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 7877384 - 7877433
Alignment:
Q  7 tggttttctcttgtctcagatcctcattttgcaaattcgcattttcaact 56  Q
    |||||||||||| |||| |||||  ||||||||||||| |||||||||||    
T  7877384 tggttttctcttatctctgatcccaattttgcaaattcacattttcaact 7877433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 7877749 - 7877782
Alignment:
Q  367 aagagatgattacttggtggtttcagtgtcctat 400  Q
    ||||||||||||||||||||||||| ||||||||    
T  7877749 aagagatgattacttggtggtttcattgtcctat 7877782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 7908345 - 7908378
Alignment:
Q  367 aagagatgattacttggtggtttcagtgtcctat 400  Q
    ||||||||||||||||||||||||| ||||||||    
T  7908345 aagagatgattacttggtggtttcattgtcctat 7908378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 48852316 - 48852462
Alignment:
Q  2 agtcttggttttctcttgtctcaga---tcctcattttgcaaattcgcattttcaacttaccgcccccaacacacacactcagaattctgctcatatcaa 98  Q
    ||||||||||||||||| ||||  |   |||||| |||||||||||||||||| || |||| | || |||||||||| |  ||||||||  || | ||||    
T  48852316 agtcttggttttctcttatctctcacaatcctcactttgcaaattcgcattttgaaattactg-cctcaacacacactcgtagaattctattcgtctcaa 48852414  T
Q  99 cttcagctcctaaaattcgatctatagatttagaagtatcgcttaacg 146  Q
    ||||||  | | ||| || |||||||||| | |||| |||||||||||    
T  48852415 cttcagaacttcaaactctatctatagatctcgaagcatcgcttaacg 48852462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 48863130 - 48863179
Alignment:
Q  248 tcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 297  Q
    |||||||||||| |||||||||||||||| |||  ||| |||||||||||    
T  48863130 tcaaacatctacctatggaatccatccaccggagctcagaaacaaatacc 48863179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48875504 - 48875565
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttaccgc 62  Q
    |||||||||||||||||  |||| || || |||||| ||||||| ||||||||||| |||||    
T  48875504 aagtcttggttttctctcatctccgaaccccattttacaaattcacattttcaactcaccgc 48875565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 48870200 - 48870252
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttca 53  Q
    ||||||||||||| |||| |||| ||||| | |||||||||||| ||||||||    
T  48870200 aagtcttggttttttcttatctccgatcccctttttgcaaattcacattttca 48870252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 48885886 - 48885938
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttca 53  Q
    ||||||||||||| |||| |||| ||||| | |||||||||||| ||||||||    
T  48885886 aagtcttggttttttcttatctccgatcccctttttgcaaattcacattttca 48885938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 50250957 - 50250897
Alignment:
Q  255 tctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattc 315  Q
    ||||| |||||||||||||||| || ||||||| |||||||||  |||||| | |||||||    
T  50250957 tctacctatggaatccatccaccgggcttcacatacaaatacctttgtctcattttgattc 50250897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 50669047 - 50669109
Alignment:
Q  342 atctatatggttttaggtatga---gttaagagatgattacttggtggtttcagtgtcctatg 401  Q
    |||||||||||||| | |||||   || |||||||||||||||||| |||||| |||||||||    
T  50669047 atctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatg 50669109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 50672412 - 50672448
Alignment:
Q  261 tatggaatccatccactggacttcacaaacaaatacc 297  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaatacc 50672448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 363
Target Start/End: Original strand, 21015673 - 21015822
Alignment:
Q  214 ttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgat 313  Q
    |||||||||||||||| || |||||||   | | |||||||||||| ||||||||||||||||| || ||||||||||||||||  ||||||||| |  |    
T  21015673 ttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagt 21015772  T
Q  314 tcgaggttagatgccaactatttatattatctatatggttttaggtatga 363  Q
    ||    |||| || ||| ||| ||| |||||||||||||||| |||||||    
T  21015773 tcatatttaggtgtcaattatatatgttatctatatggttttgggtatga 21015822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 21979817 - 21979757
Alignment:
Q  255 tctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattc 315  Q
    ||||| ||||||| || || ||||||||||| |||||||||||  |||||||| |||||||    
T  21979817 tctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctcctcttgattc 21979757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 297
Target Start/End: Complemental strand, 47452221 - 47452032
Alignment:
Q  114 ttcgatctatagatttagaagtatcgcttaacgattttagtgcttctgcttcattgaacatcaatttcttgcatccccaatcttattttcat------at 207  Q
    ||||||| |||||||||||||  || ||||| |||  |||||||||| |||||  |||| | ||||| |||| |||||||||| | | | ||      ||    
T  47452221 ttcgatcaatagatttagaagcgtcacttaatgatgatagtgcttctacttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaat 47452122  T
Q  208 taaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 297  Q
    ||||| |||||||||||||||| |||||||   |  |   |||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  47452121 taaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacc 47452032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 400
Target Start/End: Complemental strand, 11015693 - 11015544
Alignment:
Q  248 tcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattcgaggttagatgccaactatttatattatctat 347  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||||||||  |   ||||   | ||| |  ||||||||||| |||| || || ||| |    
T  11015693 tcaaacatctacctatggaatccatcaactggacatcacaaacaaataccttt---tcct---gcttccaatttagatgccaaatattcatgttgtctgt 11015600  T
Q  348 atggttttaggtatgag---ttaagagatgattacttggtggtttcagtgtcctat 400  Q
    |||||||| |||||||    ||||||||||||||||||||||| ||||||||||||    
T  11015599 atggttttgggtatgaccatttaagagatgattacttggtggtatcagtgtcctat 11015544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 401
Target Start/End: Complemental strand, 11024639 - 11024555
Alignment:
Q  320 ttagatgccaactatttatattatctatatggttttaggtatgag---ttaagagatgattacttggtggtttcagtgtcctatg 401  Q
    ||||||||||| |||| || || ||||||||||||| |||||||    | ||||||||||||||||||||| |||||||||||||    
T  11024639 ttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 11024555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 401
Target Start/End: Complemental strand, 11006126 - 11005980
Alignment:
Q  252 acatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattcgaggttagatgccaactatttatattatctatatgg 351  Q
    |||||||| ||||||||||||||||||||| || || |||||||||  |  |||||      || |  |||||||| || ||| ||| || |||||||||    
T  11006126 acatctacctatggaatccatccactggacgtctcagacaaataccttttcctcct------tccaatttagatgcaaaatatgtatgttgtctatatgg 11006033  T
Q  352 ttttaggtatgag---ttaagagatgattacttggtggtttcagtgtcctatg 401  Q
    |||| |||||||    | ||||||||||||||||||||| |||||||||||||    
T  11006032 ttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 11005980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 11006304 - 11006236
Alignment:
Q  80 agaattctgctcatatcaacttcagctcctaaaattcgatctatagatttagaagtatcgcttaacgat 148  Q
    |||||| || |||| |||||| |||||| | |||||||||| |||||||| |||| |||||||||||||    
T  11006304 agaattgtgttcatgtcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgat 11006236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 199 - 401
Target Start/End: Original strand, 48883650 - 48883855
Alignment:
Q  199 ttttcatattaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaatacca 298  Q
    |||||| ||||||| ||| |||||||||||| |  ||||||||  |   || ||||||| | |||||||||||| ||||||| ||||||||||||||||     
T  48883650 ttttcaaattaaaggttcgtgtagagggtttctgtttttgcatggttcttccaacatctgcatatggaatccatacactggatttcacaaacaaatacct 48883749  T
Q  299 atgtctcctattgattcgaggttagatgccaactatttatattatctatatggttttaggtatga---gttaagagatgattacttggtggtttcagtgt 395  Q
     |||||||| || |||| |  | ||| |   | |||||  || |||||||||||||| | |||||   || ||||||||||||| ||||||||||| |||    
T  48883750 ttgtctcctttttattccatttcagaagtacattatttcgatcatctatatggttttggttatgacccgtcaagagatgattacatggtggtttcaatgt 48883849  T
Q  396 cctatg 401  Q
    ||||||    
T  48883850 cctatg 48883855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 389
Target Start/End: Original strand, 12200206 - 12200349
Alignment:
Q  249 caaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattcgaggttagatgccaactatttatattatctata 348  Q
    |||| ||||||||||||||||||||| || |  |||||||| |||||||  |||||||| |||||| || |||| ||||  || ||  | || |||||||    
T  12200206 caaatatctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctata 12200305  T
Q  349 tggttttaggtatga---gttaagagatgattacttggtggttt 389  Q
    ||||||| | |||||   || |||||||||||||||||||||||    
T  12200306 tggttttggttatgaccggtcaagagatgattacttggtggttt 12200349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 389
Target Start/End: Original strand, 12444634 - 12444777
Alignment:
Q  249 caaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattcgaggttagatgccaactatttatattatctata 348  Q
    |||| ||||||||||||||||||||| || |  |||||||| |||||||  |||||||| |||||| || |||| ||||  || ||  | || |||||||    
T  12444634 caaatatctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctata 12444733  T
Q  349 tggttttaggtatga---gttaagagatgattacttggtggttt 389  Q
    ||||||| | |||||   || |||||||||||||||||||||||    
T  12444734 tggttttggttatgaccggtcaagagatgattacttggtggttt 12444777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15348520 - 15348582
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttaccgcc 63  Q
    |||||||||||||||||| |||| |||||| | || |||||||| ||||||||| ||||||||    
T  15348520 aagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgcc 15348582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12199965 - 12200012
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcat 48  Q
    ||||| |||||||||||| |||| |||||||| |||||||||||||||    
T  12199965 aagtcatggttttctcttatctctgatcctcactttgcaaattcgcat 12200012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12444393 - 12444440
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcat 48  Q
    ||||| |||||||||||| |||| |||||||| |||||||||||||||    
T  12444393 aagtcatggttttctcttatctctgatcctcactttgcaaattcgcat 12444440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 4032333 - 4032277
Alignment:
Q  4 tcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttacc 60  Q
    ||||||||  ||||| | || |||||||| ||||||||||||||||||||| |||||    
T  4032333 tcttggttaactcttatatctgatcctcactttgcaaattcgcattttcaaattacc 4032277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 42562547 - 42562439
Alignment:
Q  206 attaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctc 305  Q
    ||||||| ||| |||||||||||| |||||||||||  |    ||  | ||||| |||||||||||||||  |||| |||||||||||||||  ||||||    
T  42562547 attaaaggttcgtgtagagggtttatacttttgcattgtggtgcatgcttctacctatggaatccatccatcggacatcacaaacaaatacctttgtctc 42562448  T
Q  306 ctattgatt 314  Q
    |||||||||    
T  42562447 ctattgatt 42562439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29687709 - 29687771
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttaccgcc 63  Q
    |||||||||||||||||  | ||  | ||||| ||||||||||| ||||||||||||||||||    
T  29687709 aagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttaccgcc 29687771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 29712627 - 29712574
Alignment:
Q  261 tatggaatccatccactggacttcacaaacaaataccaatgtctcctattgatt 314  Q
    |||||||||||||||||||| |||||||| | |||||||  |||| ||||||||    
T  29712627 tatggaatccatccactggagttcacaaatatataccaaattctcttattgatt 29712574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 1812089 - 1812141
Alignment:
Q  7 tggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttac 59  Q
    |||||||||||| ||||| |||| || ||||||||||  ||||||||||||||    
T  1812089 tggttttctcttatctcaaatccccactttgcaaattatcattttcaacttac 1812141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 24309841 - 24309893
Alignment:
Q  7 tggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttac 59  Q
    |||||||||||| |||| ||| |||| ||||||||||| ||||||||||||||    
T  24309841 tggttttctcttatctctgattctcactttgcaaattcacattttcaacttac 24309893  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24322120 - 24322163
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattc 44  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||    
T  24322120 aagtcttggttttctcttatctcaaatcctcgttttgcaaattc 24322163  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 24310084 - 24310133
Alignment:
Q  248 tcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 297  Q
    |||||||| |||||||||||||||||||| ||| |||| | |||||||||    
T  24310084 tcaaacatttacgtatggaatccatccaccggagttcatagacaaatacc 24310133  T

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Target: scaffold0508 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11920 - 11978
Alignment:
Q  1 aagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttac 59  Q
    ||||| |||||||||||| |||| |||  ||| ||||||||||| ||||||||||||||    
T  11920 aagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttac 11978  T

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