View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2138_low_15 (Length: 389)

Name: NF2138_low_15
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2138_low_15
NF2138_low_15
[»] chr8 (18 HSPs)
chr8 (111-373)||(1656338-1656598)
chr8 (111-341)||(6334310-6334539)
chr8 (154-341)||(36797923-36798109)
chr8 (111-334)||(24512984-24513204)
chr8 (154-335)||(23713039-23713219)
chr8 (170-341)||(14033223-14033393)
chr8 (111-341)||(413703-413933)
chr8 (154-365)||(37404305-37404516)
chr8 (207-341)||(12880420-12880553)
chr8 (154-362)||(1659681-1659883)
chr8 (185-341)||(6337658-6337813)
chr8 (202-341)||(12877226-12877364)
chr8 (199-341)||(36803680-36803821)
chr8 (186-341)||(14029885-14030039)
chr8 (199-341)||(24516648-24516789)
chr8 (199-341)||(27276343-27276484)
chr8 (154-186)||(14033178-14033210)
chr8 (305-341)||(417337-417373)
[»] scaffold0035 (2 HSPs)
scaffold0035 (111-341)||(80286-80515)
scaffold0035 (154-341)||(83878-84061)
[»] chr4 (11 HSPs)
chr4 (154-341)||(23314364-23314550)
chr4 (154-341)||(22158810-22158996)
chr4 (154-328)||(50995592-50995765)
chr4 (154-341)||(25920541-25920728)
chr4 (111-341)||(54397728-54397955)
chr4 (154-365)||(25922751-25922959)
chr4 (185-341)||(45698523-45698678)
chr4 (154-262)||(22162126-22162230)
chr4 (154-259)||(50997767-50997870)
chr4 (111-141)||(25920744-25920774)
chr4 (300-341)||(22162268-22162309)
[»] chr2 (8 HSPs)
chr2 (154-341)||(40325498-40325684)
chr2 (154-341)||(2381884-2382064)
chr2 (154-341)||(36215825-36216008)
chr2 (111-211)||(36213468-36213566)
chr2 (154-262)||(8264870-8264974)
chr2 (185-341)||(2386932-2387087)
chr2 (185-262)||(40322293-40322369)
chr2 (111-141)||(40325454-40325484)
[»] chr5 (9 HSPs)
chr5 (111-365)||(27265201-27265453)
chr5 (154-341)||(28396081-28396267)
chr5 (154-341)||(31173710-31173896)
chr5 (111-243)||(41880863-41880995)
chr5 (246-341)||(41882009-41882104)
chr5 (154-341)||(27261694-27261880)
chr5 (154-262)||(28392569-28392675)
chr5 (199-341)||(31170410-31170551)
chr5 (185-262)||(41873622-41873698)
[»] chr3 (8 HSPs)
chr3 (156-341)||(44185065-44185249)
chr3 (156-365)||(37975093-37975302)
chr3 (111-365)||(3805413-3805664)
chr3 (111-308)||(33707052-33707245)
chr3 (154-262)||(3808638-3808741)
chr3 (218-341)||(37982041-37982163)
chr3 (111-141)||(37975316-37975346)
chr3 (111-141)||(44178388-44178418)
[»] chr7 (6 HSPs)
chr7 (154-341)||(39755013-39755199)
chr7 (154-341)||(24058875-24059061)
chr7 (154-365)||(5097931-5098142)
chr7 (154-341)||(5094349-5094530)
chr7 (154-341)||(39751710-39751892)
chr7 (111-141)||(24058831-24058861)
[»] chr1 (4 HSPs)
chr1 (111-341)||(25644697-25644924)
chr1 (154-295)||(8030105-8030245)
chr1 (154-341)||(25650684-25650869)
chr1 (175-341)||(8026788-8026953)
[»] chr6 (1 HSPs)
chr6 (111-365)||(13845306-13845557)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 111 - 373
Target Start/End: Complemental strand, 1656598 - 1656338
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    |||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1656598 actacttcataattatacacatataaaatgattttttttttt--ctaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 1656501  T
Q  211 accataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattccc 310  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||    
T  1656500 aacataattttgaattccaaattatttcataaaa-aatgtattgatcaagtggttccagagtacattttaaataggtgggagcacccaggttcgattccc 1656402  T
Q  311 aggggtgataattttaatttttaatga-ttttgtcaaacatttcaactaaattggagagtgatt 373  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1656401 aggggtgataattttaatttttaatgatttttgtcaaacatttcaactaaattggagagtgatt 1656338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 111 - 341
Target Start/End: Complemental strand, 6334539 - 6334310
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    ||||||||||||||||||||| |||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6334539 actacttcataattatacacacataaaatgatttttttttctcactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 6334440  T
Q  211 accataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattccc 310  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||  |||| |    
T  6334439 aacataattttgaattccaaattatttcataaaa-aatgtattgatcaagtggttccagagtacattttaaataggtgggagcatccaggtttgattctc 6334341  T
Q  311 aggggtgataattttaatttttaatgatttt 341  Q
    |||||||||||||||||||||||||||||||    
T  6334340 aggggtgataattttaatttttaatgatttt 6334310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 36798109 - 36797923
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||    
T  36798109 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattctaaattattttataaaa-aatgtatt 36798011  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||||| |||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||    
T  36798010 gatcaagtggttccagagtacattttaaataggtgggagcactcaggttcgattcccaggggtgataattttaatttttaatgatttt 36797923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 111 - 334
Target Start/End: Complemental strand, 24513204 - 24512984
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    |||||||||||||||||||||||||||||||            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24513204 actacttcataattatacacatataaaatgatttttttttt--actaaagctaggttaaaaaggcactgcaaataaaaataaaataatttgctcactaat 24513107  T
Q  211 accataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattccc 310  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  24513106 aacataattttgaattccaaattatttcataaaa-aatgtattgatcaagtggttccaaagtacattttaaataggtgggagcacccaggttcaattccc 24513008  T
Q  311 aggggtgataattttaatttttaa 334  Q
    | ||||||||||||||||||||||    
T  24513007 aagggtgataattttaatttttaa 24512984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 154 - 335
Target Start/End: Original strand, 23713039 - 23713219
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  23713039 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 23713137  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaat 335  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||    
T  23713138 gatcaagtggttccagagtatattttaaataggtgggagcacccaggtttgattcccaggggtgataattttaatttttaat 23713219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 170 - 341
Target Start/End: Original strand, 14033223 - 14033393
Alignment:
Q  170 aaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccag 269  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  14033223 aaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatgtattgatcaagtggttccag 14033321  T
Q  270 agtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  14033322 agtacattttaaataggtgggagcacccaggttcgattcccaggggtgataattttaatttttaatgatttt 14033393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 111 - 341
Target Start/End: Complemental strand, 413933 - 413703
Alignment:
Q  111 actacttcataattatacacatataaaatga-nnnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaa 209  Q
    |||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  413933 actacttcataattatacacatataaaatgatttttttttttttactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaa 413834  T
Q  210 taccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcc 309  Q
    || ||||||||| ||||| |||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||  ||||  |||||    
T  413833 taacataattttaaattcgaaattatttcataaaa-aatgtattgatcaagtggtttcagagtacattttaaataggtgggagcaccgaggtttgattcc 413735  T
Q  310 caggggtgataattttaatttttaatgatttt 341  Q
     ||||||||||||||||||||||||| |||||    
T  413734 taggggtgataattttaatttttaataatttt 413703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 154 - 365
Target Start/End: Original strand, 37404305 - 37404516
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  37404305 actaaagctaggttataaaggcattgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 37404403  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt-gtcaaacattt 352  Q
    |||||| || || | ||||||||| ||||||| ||| ||||||| ||||| ||||||| || ||||||||||||||||||||||||||  |||| |  ||    
T  37404404 gatcaattggtttcggagtacattttaaatagttggaagcacccaggttcgattcccaaggatgataattttaatttttaatgattttattcaagctgtt 37404503  T
Q  353 caactaaattgga 365  Q
    |||||||||||||    
T  37404504 caactaaattgga 37404516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 12880420 - 12880553
Alignment:
Q  207 taataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaat 306  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||| | ||||| ||    
T  12880420 taataacataattttgaattccaaattatttcataaaa-aatgtattgatcaagtggttctagagtacattttaaataggtgggagcactcaggttcgat 12880518  T
Q  307 tcccaggggtgataattttaatttttaatgatttt 341  Q
    || ||||| ||||||||||||||||||||||||||    
T  12880519 tcgcagggatgataattttaatttttaatgatttt 12880553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 362
Target Start/End: Original strand, 1659681 - 1659883
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||| ||| ||||||||| ||||| ||||    |||||| |||||| |||| ||||| ||||||| ||| ||||||||| ||||||||    
T  1659681 actaaagctaggttat-aagtcactgcaaaaaaaaaaaaaa----ttgctcgctaataacatatttttgcattccaatttaattcataaaa-aatgtatt 1659774  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgattttgtcaaacatttc 353  Q
    | ||||||| ||   ||  |||||  ||||| ||||| |||  |  |||| ||||||| | |||||||||||||||||||||||||||  ||||   |||    
T  1659775 ggtcaagtggtttgggaaaacatttcaaataagtgggtgcattcaagttcgattcccacgagtgataattttaatttttaatgatttttgcaaatcgttc 1659874  T
Q  354 aactaaatt 362  Q
    |||||||||    
T  1659875 aactaaatt 1659883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 341
Target Start/End: Original strand, 6337658 - 6337813
Alignment:
Q  185 aaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaata 284  Q
    |||||||||| || ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||| ||||||| ||   ||  |||||  |||||    
T  6337658 aaaaataaaaaaaattgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtattggtcaagtggtttgggaaaacatttcaaata 6337756  T
Q  285 ggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
     ||||| |||     |||| ||||||| | |||||||||||||||||||||||||||    
T  6337757 agtgggtgcatttaagttcgattcccacgagtgataattttaatttttaatgatttt 6337813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 202 - 341
Target Start/End: Complemental strand, 12877364 - 12877226
Alignment:
Q  202 ctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggt 301  Q
    |||||||||| |||| ||||| ||||||| ||| |||||||| |||||||||| ||||||| ||   ||  |||||  ||||| ||||| |||  |  ||    
T  12877364 ctcactaataacatatttttgcattccaatttaattcataaa-taatgtattggtcaagtggtttgggaaaacatttcaaataagtgggtgcattcaagt 12877266  T
Q  302 tcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  12877265 tcaattcccacgagtgataattttaatttttaatgatttt 12877226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 341
Target Start/End: Original strand, 36803680 - 36803821
Alignment:
Q  199 ttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccct 298  Q
    ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||| ||||||| ||   ||  |||||  ||||| ||||| |||  |     
T  36803680 ttgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtattggtcaagtggtttgggaaaacatttcaaataagtgggtgcattca 36803778  T
Q  299 ggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
     |||| ||||||| | |||||||||||||||||||||||||||    
T  36803779 agttcgattcccacgagtgataattttaatttttaatgatttt 36803821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 14030039 - 14029885
Alignment:
Q  186 aaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaatag 285  Q
    |||| |||| || ||||||||||||| |||| ||||| |||| || ||| ||||||||| ||||||||| ||||||| ||    |  |||||  |||||     
T  14030039 aaaaaaaaaaaaattgctcactaataacatatttttgcattcgaatttaattcataaaa-aatgtattggtcaagtggtttggaaaaacatttcaaataa 14029941  T
Q  286 gtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||| |||  |  |||||||||||| | |||||||||||||||||||||||||||    
T  14029940 gtgggtgcattcaagttcaattcccacgagtgataattttaatttttaatgatttt 14029885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 341
Target Start/End: Original strand, 24516648 - 24516789
Alignment:
Q  199 ttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccct 298  Q
    ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||| ||||||| ||   ||  |||||  ||||| ||||| |||  |     
T  24516648 ttgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtattggtcaagtggtttgggaaaacatttcaaataagtgggtgcattca 24516746  T
Q  299 ggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
     |||| ||||| | |  ||||||||||||||||||||||||||    
T  24516747 agttcgattccaacgaatgataattttaatttttaatgatttt 24516789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 341
Target Start/End: Original strand, 27276343 - 27276484
Alignment:
Q  199 ttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccct 298  Q
    ||||||||||||| |||| ||| | |||||||||||||||||||||  |||||||| ||||||| ||   | |||   |  || ||  || ||||||||     
T  27276343 ttgctcactaataacatattttagcattccaaattatttcataaaa-gatgtattggtcaagtggtttgggggtatgattcaagtacttgagagcaccca 27276441  T
Q  299 ggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||  |||||||||| ||||| ||||||||||||||||||||    
T  27276442 ggtttgattcccagggctgatatttttaatttttaatgatttt 27276484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 14033178 - 14033210
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataa 186  Q
    |||||||||||||||||||||||||||||||||    
T  14033178 actaaagctaggttataaaggcactgcaaataa 14033210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 417337 - 417373
Alignment:
Q  305 attcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||| | |||||||||||||||||||||||||||    
T  417337 attcccacgagtgataattttaatttttaatgatttt 417373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 111 - 341
Target Start/End: Complemental strand, 80515 - 80286
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80515 actacttcataattatacacatataaaatgattttttttttt-actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 80417  T
Q  211 accataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattccc 310  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||| |||||| ||||||    
T  80416 aacataattttgaattccaaattatttcataaaaaaatgtattgatcaagtggtttgagagtacattgtaaataggtgggagcaccttggttcgattccc 80317  T
Q  311 aggggtgataattttaatttttaatgatttt 341  Q
    |||||||||||||||||||||||||||||||    
T  80316 aggggtgataattttaatttttaatgatttt 80286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 341
Target Start/End: Original strand, 83878 - 84061
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||| ||| |||| |||  ||||| |||| || |||||| |||||| |||| ||||| ||||||| ||| ||||||||| ||||||||    
T  83878 actaaagctaggttat-aagtcactccaa--aaaaaaaaaaaaaattgctcgctaataacatatttttgcattccaatttaattcataaaa-aatgtatt 83973  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    | ||||||| ||   ||  |||||  ||||| ||||| |||  |  |||| ||||||| | |||||||||||||||||||||||||||    
T  83974 ggtcaagtggtttgggaaaacatttcaaataagtgggtgcattcaagttcgattcccacgagtgataattttaatttttaatgatttt 84061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 23314550 - 23314364
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  23314550 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 23314452  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23314451 gatcaagtggttccagagtacattttaaataggtgagagcacccaggttcaattcccaggggtgataattttaatttttaatgatttt 23314364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 22158996 - 22158810
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  22158996 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 22158898  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||||| |||||||||||||| ||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  22158897 gatcaagtggttccagagtacattttaaataggtgggagcacccaggtttgattcccaggggtgataattttaatttttaatgatttt 22158810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 154 - 328
Target Start/End: Complemental strand, 50995765 - 50995592
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  50995765 actaaagctaggttataaaggcacggcaaataaaaataaaataattttctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 50995667  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaat 328  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  50995666 gatcaagtggttccagagtacattttaaataggtggaagcacccaggttcgattcccaggggtgataattttaat 50995592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 25920728 - 25920541
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  25920728 actaaagctaggttataaaggcactgcaaataaaaataaaataattttctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 25920630  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccagg-ggtgataattttaatttttaatgatttt 341  Q
    ||||||||| |||||||||||||| |||||| ||| |||||| | ||||| |||| |||| ||||||||||||||||||||||||||||    
T  25920629 gatcaagtggttccagagtacattttaaataagtgagagcactcaggttcgattctcaggtggtgataattttaatttttaatgatttt 25920541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 111 - 341
Target Start/End: Complemental strand, 54397955 - 54397728
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    |||||||||||||||||||||||||||||||            | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54397955 actacttcataattatacacatataaaatgatttttttttttaa-taaagctaggttataaaggcactccaaataaaaataaaataatttgctcactaat 54397857  T
Q  211 accataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattccc 310  Q
    | ||||||||||| |||||||||||||||||||| ||| ||||||||||||| || | ||||||||| |||||| ||||||||| |  | ||||||||||    
T  54397856 aacataattttgagttccaaattatttcataaaa-aatatattgatcaagtggtttcggagtacattttaaataagtgggagcatctagattcaattccc 54397758  T
Q  311 aggggtgataattttaatttttaatgatttt 341  Q
    | |||||||||||||||||||||||||||||    
T  54397757 a-gggtgataattttaatttttaatgatttt 54397728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 365
Target Start/End: Original strand, 25922751 - 25922959
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||| | ||||||||| ||||| |||| |  ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||| ||||    
T  25922751 actaaagctaggttataa-gtcactgcaaaaaaaaaaaaaaaa--ttgctcactaataacatatttttgcattccaatttaattcataaaa-aatatatt 25922846  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatga-ttttgtcaaacattt 352  Q
    | ||||||| ||   ||  |||||  ||||| ||||| |||  |  |||| ||| ||| | ||||||||||||||||||||||| |||||||||    ||    
T  25922847 ggtcaagtggtttgggaaaacatttcaaataagtgggtgcattcaagttcgatttccacgagtgataattttaatttttaatgatttttgtcaagtcgtt 25922946  T
Q  353 caactaaattgga 365  Q
    |||||||||||||    
T  25922947 caactaaattgga 25922959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 341
Target Start/End: Complemental strand, 45698678 - 45698523
Alignment:
Q  185 aaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaata 284  Q
    ||||| |||| || ||||||||||||| |||| ||||| ||| ||| ||| ||||||||| ||||||||| ||||||| ||   ||  |||||  |||||    
T  45698678 aaaaaaaaaaaaaattgctcactaataacatatttttgcatttcaatttaattcataaaa-aatgtattggtcaagtggtttgggaaaacatttcaaata 45698580  T
Q  285 ggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
     ||||| |||  |  |||||||||||| | |||||||||||||||||||||||||||    
T  45698579 agtgggtgcattcaagttcaattcccacgagtgataattttaatttttaatgatttt 45698523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 22162126 - 22162230
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    ||||||||||  |||||| | ||||||||| |||||||||| |  ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||    
T  22162126 actaaagctaaattataa-gtcactgcaaaaaaaaataaaaaa--ttgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtatt 22162221  T
Q  254 gatcaagtg 262  Q
    | |||||||    
T  22162222 ggtcaagtg 22162230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 50997767 - 50997870
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    ||||||||||  |||||| | ||||||||| ||||| |||| || ||||||||||||| |||| ||||  ||||||| ||| ||||||||| ||||||||    
T  50997767 actaaagctaaattataa-gtcactgcaaaaaaaaaaaaaaaaaattgctcactaataacatatttttacattccaatttaattcataaaa-aatgtatt 50997864  T
Q  254 gatcaa 259  Q
    | ||||    
T  50997865 ggtcaa 50997870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Complemental strand, 25920774 - 25920744
Alignment:
Q  111 actacttcataattatacacatataaaatga 141  Q
    |||||||||||||||||||||||||||||||    
T  25920774 actacttcataattatacacatataaaatga 25920744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 22162268 - 22162309
Alignment:
Q  300 gttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  22162268 gttcgattcccacgagtgataattttaatttttaatgatttt 22162309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 154 - 341
Target Start/End: Original strand, 40325498 - 40325684
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  40325498 actaaagctaggttacaaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 40325596  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||||| || ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  40325597 gatcaagtggtttcagagtacattttaaataggtgggagcacctaggttcaattcccaggggtgataattttaatttttaatgatttt 40325684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 2382064 - 2381884
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  2382064 actaaagctaggttataaaggccctgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 2381966  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    |||||| || || ||||||||||| |||||||||       ||| ||||| ||||| |||| ||||||||||||||||||||||||||    
T  2381965 gatcaaatggtttcagagtacattttaaataggt------ccccaggttcgattcctagggatgataattttaatttttaatgatttt 2381884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 341
Target Start/End: Original strand, 36215825 - 36216008
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataa-tttgctcactaataccataattttgaattccaaattatttcataaaataatgtat 252  Q
    |||||||||||||||||| | ||||||||| |||||||||| || |||||||||||||| |||| ||||| ||||||| ||| ||||| ||| |||||||    
T  36215825 actaaagctaggttataa-gtcactgcaaaaaaaaataaaaaaaatttgctcactaataacatatttttgcattccaatttaattcatgaaa-aatgtat 36215922  T
Q  253 tgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    |||||||||| ||   ||  |||||  ||||| ||||| |||     |||| |||||||   |||||||||||||||||||||||||||    
T  36215923 tgatcaagtggtttgggaaaacatttcaaataagtgggtgcatttaagttcgattccca---gtgataattttaatttttaatgatttt 36216008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 36213566 - 36213468
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    |||||||||||||||||||||||||||||||            ||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  36213566 actacttcataattatacacatataaaatgatttttttttt--actaaagctaggttataaaagcactgcaaataaaaataaaataattttctcattaat 36213469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 8264974 - 8264870
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||| | ||||||||| ||||| |||| |  ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||    
T  8264974 actaaagctaggttataa-gtcactgcaaaaaaaaaaaaaaaa--ttgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtatt 8264879  T
Q  254 gatcaagtg 262  Q
    | |||||||    
T  8264878 ggtcaagtg 8264870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 341
Target Start/End: Original strand, 2386932 - 2387087
Alignment:
Q  185 aaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaata 284  Q
    ||||| |||| || ||||||| ||||| |||| ||||| ||||||| ||| ||||||||| ||||||||| ||||||| ||   ||  |||||  |||||    
T  2386932 aaaaaaaaaaaaacttgctcaataataacatatttttgcattccaatttaattcataaaa-aatgtattggtcaagtggtttgggaaaacatttcaaata 2387030  T
Q  285 ggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
     ||||| |||  |  |||  ||||||| | |||||||||||||||||||||||||||    
T  2387031 agtgggtgcattcaagtttgattcccacgagtgataattttaatttttaatgatttt 2387087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 40322369 - 40322293
Alignment:
Q  185 aaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtg 262  Q
    ||||| |||| || ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||| |||||||    
T  40322369 aaaaaaaaaaaaaattgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtattggtcaagtg 40322293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 40325454 - 40325484
Alignment:
Q  111 actacttcataattatacacatataaaatga 141  Q
    |||||||||||||||||||||||||||||||    
T  40325454 actacttcataattatacacatataaaatga 40325484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 111 - 365
Target Start/End: Original strand, 27265201 - 27265453
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    |||||||||||||||||||||||||||||||            |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  27265201 actacttcataattatacacatataaaatgatttttttttt--actaaagctaggttataacggcaatgcaaataaaaataaaataatttgctcactaat 27265298  T
Q  211 accataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattccc 310  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||    
T  27265299 aacataattttgaattccaaattatttcataaaa-aatgtattgatcaagtggtttcagagtacattttaaataggtgggagcacccaggttcaattccc 27265397  T
Q  311 aggggtgataattttaatttttaatga-ttttgtcaaacatttcaactaaattgga 365  Q
    ||||||||| ||||||||||||||||| ||||| ||| |  |||||||||||||||    
T  27265398 aggggtgattattttaatttttaatgatttttgccaagctgttcaactaaattgga 27265453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 154 - 341
Target Start/End: Original strand, 28396081 - 28396267
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  28396081 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 28396179  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||||| |||||||||||||| ||||||  ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  28396180 gatcaagtggttccagagtacattttaaatacctgggagcacccaggtttgattcccaggggtgataattttaatttttaatgatttt 28396267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 154 - 341
Target Start/End: Original strand, 31173710 - 31173896
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  31173710 actaaagctaggttataaaggcaccgcaaataaaaataaaataatttactcattaataacataattttgaattccaaattatttcataaaa-aatgtatt 31173808  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||||| ||| |||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||    
T  31173809 gatcaagtggttctagagtacattttaaataggtgggagcactcaggttcgattcccaggggtgataattttaatttttaatgatttt 31173896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 41880863 - 41880995
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    ||||||||||||||||||||| |||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41880863 actacttcataattatacacacataaaatgatttttttttttcactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 41880962  T
Q  211 accataattttgaattccaaattatttcataaa 243  Q
    | |||||||||||||||||||||||||||||||    
T  41880963 aacataattttgaattccaaattatttcataaa 41880995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 41882009 - 41882104
Alignment:
Q  246 aatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  41882009 aatgtattgatcaagtggttccagagtacattttaaataggtgggagcacccaggttcgattctcaggggtgataattttaatttttaatgatttt 41882104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 27261880 - 27261694
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaa-ataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtat 252  Q
    |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||||| |||| ||||| ||||||| ||| ||||||||| |||||||    
T  27261880 actaaagctaggttataa-gtcactgcaaaaaaaataaaaaataaattgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtat 27261783  T
Q  253 tgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    || ||||||| ||   ||  |||||  ||||| ||||| |||  |  ||||||||||||   |||||||||||||||||||||||||||    
T  27261782 tggtcaagtggtttgggaaaacatttcaaataagtgggtgcattcaagttcaattcccacaagtgataattttaatttttaatgatttt 27261694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 28392675 - 28392569
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    ||||||||||  |||||| | ||||||||| ||||| |||| || ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||    
T  28392675 actaaagctaaattataa-gtcactgcaaaaaaaaaaaaaaaaaattgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtatt 28392578  T
Q  254 gatcaagtg 262  Q
    | |||||||    
T  28392577 ggtcaagtg 28392569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 341
Target Start/End: Complemental strand, 31170551 - 31170410
Alignment:
Q  199 ttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccct 298  Q
    ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||| ||||||| ||   ||  |||||  ||||| || || |||  |     
T  31170551 ttgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtattggtcaagtggtttgggaaaacatttcaaataagttggtgcattca 31170453  T
Q  299 ggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
     |||| |||||||   |||||||||||||||||||||||||||    
T  31170452 agttcgattcccataagtgataattttaatttttaatgatttt 31170410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 41873698 - 41873622
Alignment:
Q  185 aaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtg 262  Q
    ||||| |||| || ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||| |||||||    
T  41873698 aaaaaaaaaaaaaattgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtattggtcaagtg 41873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 156 - 341
Target Start/End: Original strand, 44185065 - 44185249
Alignment:
Q  156 taaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtattga 255  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  44185065 taaagctaggttacaaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattattttataaaa-aatgtattga 44185163  T
Q  256 tcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  44185164 tcaagtggttccagagtacattttaaataggtgggagcacccaggttcgattcccaggggtgataattttaatttttaatgatttt 44185249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 156 - 365
Target Start/End: Complemental strand, 37975302 - 37975093
Alignment:
Q  156 taaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtattga 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  37975302 taaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatatattga 37975204  T
Q  256 tcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatga-ttttgtcaaacatttca 354  Q
    ||||||| |||  ||||||||| |||||| | |||||||||| ||||  ||||||||||||||||||||||||||||||||| ||||| ||| |  ||||    
T  37975203 tcaagtggttctggagtacattttaaataagcgggagcacccaggtttgattcccaggggtgataattttaatttttaatgatttttgccaagctgttca 37975104  T
Q  355 actaaattgga 365  Q
    |||||||||||    
T  37975103 actaaattgga 37975093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 111 - 365
Target Start/End: Complemental strand, 3805664 - 3805413
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    |||||||||||||||||||||||||||||||            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3805664 actacttcataattatacacatataaaatgattttttttt---actaaagctaggttataaaggcagtgcaaataaaaataaaataatttgctcactaat 3805568  T
Q  211 accataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattccc 310  Q
    | ||||||||||||||||||||||||| |||||| ||||||||||||||||| |||   |||||| | |||||||||| |||||||  |||||||||| |    
T  3805567 aacataattttgaattccaaattattttataaaa-aatgtattgatcaagtggttctgaagtacaatttaaataggtgagagcaccaaggttcaattctc 3805469  T
Q  311 aggggtgataattttaatttttaatga-ttttgtcaaacatttcaactaaattgga 365  Q
    ||||||||||||||||||||||||||| ||||| ||| |  |||||||||||||||    
T  3805468 aggggtgataattttaatttttaatgatttttgccaagctgttcaactaaattgga 3805413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 111 - 308
Target Start/End: Original strand, 33707052 - 33707245
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  33707052 actacttcataattatacacatataaaatgattttttttt---actaaagctaggttataaaggcactgcaaataaaaataaaataattttatcactaat 33707148  T
Q  211 accataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattc 308  Q
    |   |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||| |||||||||||| ||||| ||||    
T  33707149 aatgtaattttgaattccaaattatttcataaaa-aatgtattgatcaagtggttccagaatacattttaaataagtgggagcacccaggttcgattc 33707245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 3808638 - 3808741
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||    
T  3808638 actaaagctaggttataa-gtcactgcaaaaaaaaa-aaaata--ttgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtatt 3808732  T
Q  254 gatcaagtg 262  Q
    | |||||||    
T  3808733 ggtcaagtg 3808741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 341
Target Start/End: Original strand, 37982041 - 37982163
Alignment:
Q  218 ttttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtg 317  Q
    ||||| ||||||| ||| ||||||||| ||||||||| ||||||| ||   ||  |||||  ||||| ||||| |||  |  |||| ||||||| | |||    
T  37982041 ttttgcattccaatttaattcataaaa-aatgtattggtcaagtggtttgggaaaacatttgaaataagtgggtgcattcaagttcgattcccacgagtg 37982139  T
Q  318 ataattttaatttttaatgatttt 341  Q
    ||||||||||||||||||||||||    
T  37982140 ataattttaatttttaatgatttt 37982163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Complemental strand, 37975346 - 37975316
Alignment:
Q  111 actacttcataattatacacatataaaatga 141  Q
    |||||||||||||||||||||||||||||||    
T  37975346 actacttcataattatacacatataaaatga 37975316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 44178388 - 44178418
Alignment:
Q  111 actacttcataattatacacatataaaatga 141  Q
    |||||||||||||||||||||||||||||||    
T  44178388 actacttcataattatacacatataaaatga 44178418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 154 - 341
Target Start/End: Original strand, 39755013 - 39755199
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  39755013 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 39755111  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||||| |||||||||||||| ||||||||||||||||||| ||||  ||||  |||||||||||||||||||||||||||||||    
T  39755112 gatcaagtggttccagagtacattttaaataggtgggagcacccaggtttgattcttaggggtgataattttaatttttaatgatttt 39755199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 154 - 341
Target Start/End: Original strand, 24058875 - 24059061
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  24058875 actaaagctaggttataaaagcactacaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatatatt 24058973  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    ||||||||| ||| |||||||||| |||||| ||||||||||||  |||||||||| |||| ||||||||||||||||||||||||||    
T  24058974 gatcaagtggttctagagtacattttaaataagtgggagcacccaagttcaattcctagggatgataattttaatttttaatgatttt 24059061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 154 - 365
Target Start/End: Original strand, 5097931 - 5098142
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||    
T  5097931 actaaagctaggttataaaggcacggcaaataaaaataaaataatttgctcactaataacataattttaaatttcaaattatttcataaaa-aatgtatt 5098029  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatga-ttttgtcaaacattt 352  Q
    ||||||||| |||  ||||||||| ||||||||||||| ||||  ||||  ||| |||||||||||||||||||||| |||||| ||||| ||| |  ||    
T  5098030 gatcaagtggttctggagtacattttaaataggtgggaacacctaggtttgatttccaggggtgataattttaatttgtaatgatttttgccaagctgtt 5098129  T
Q  353 caactaaattgga 365  Q
    |||||||||||||    
T  5098130 caactaaattgga 5098142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 5094530 - 5094349
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||| | ||||||||| ||||| |||| || ||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||    
T  5094530 actaaagctaggttataa-gtcactgcaaaaaaaaaaaaaaaaaattgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtatt 5094433  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    | | ||||| ||  |||  |||||  ||||| ||||| |||  |  |||| |||||||    |||||||||||||||||||| |||||    
T  5094432 ggttaagtggtttgagaaaacatttcaaataagtgggtgcattcaagttcgattccca----tgataattttaatttttaataatttt 5094349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 341
Target Start/End: Complemental strand, 39751892 - 39751710
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    ||||||||||  |||||| | ||||||||| ||||||||||    ||||||||||||| |||| ||||| ||| ||| ||| ||||||||| ||||||||    
T  39751892 actaaagctaaattataa-gtcactgcaaaaaaaaataaaaa---ttgctcactaataacatatttttgcatttcaatttaattcataaaa-aatgtatt 39751798  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    | ||||||| ||   ||  |||||  ||||| ||||| |||  |  |||| ||||||| | |||||||||||||||||||||||||||    
T  39751797 ggtcaagtggtttgggaaaacatttcaaataagtgggtgcattcaagttcgattcccacgagtgataattttaatttttaatgatttt 39751710  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 24058831 - 24058861
Alignment:
Q  111 actacttcataattatacacatataaaatga 141  Q
    |||||||||||||||||||||||||||||||    
T  24058831 actacttcataattatacacatataaaatga 24058861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 111 - 341
Target Start/End: Complemental strand, 25644924 - 25644697
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25644924 actacttcataattatacacatataaaatgatttttttttt--actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 25644827  T
Q  211 accataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattccc 310  Q
    | ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||| |||||||||||| ||||  ||||||    
T  25644826 aacattattttgaattccaaattatttcataaaa-aatgtattgatcaagtggttccggagtacattttaaataagtgggagcacccaggtttgattccc 25644728  T
Q  311 aggggtgataattttaatttttaatgatttt 341  Q
    |||||||||||||||||||||||||||||||    
T  25644727 aggggtgataattttaatttttaatgatttt 25644697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 154 - 295
Target Start/End: Original strand, 8030105 - 8030245
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  8030105 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataacataattttgaattccaaattatttcataaaa-aatgtatt 8030203  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcac 295  Q
    ||||||||| ||| |||||||||| |||||||||||||||||    
T  8030204 gatcaagtggttctagagtacattttaaataggtgggagcac 8030245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 341
Target Start/End: Original strand, 25650684 - 25650869
Alignment:
Q  154 actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtatt 253  Q
    |||||||||| ||||||| | ||||||||| ||||| |||| |||||||||||||||| |||| ||||| ||||||| ||| ||||||||| ||||||||    
T  25650684 actaaagctaagttataa-gtcactgcaaaaaaaaaaaaaaaaatttgctcactaataacatatttttgcattccaatttaattcataaaa-aatgtatt 25650781  T
Q  254 gatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    | ||||||| ||   ||  |||||  ||||| || || |||  |  |||||||||||| | |||||||||||||||||||||||||||    
T  25650782 ggtcaagtggtttgggaaaacatttcaaataagttggtgcattcaagttcaattcccacgagtgataattttaatttttaatgatttt 25650869  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 341
Target Start/End: Complemental strand, 8026953 - 8026788
Alignment:
Q  175 cactgcaaataaaaataaaataatttgctcactaataccataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtac 274  Q
    ||||||||| ||||| |||| || ||||||||||||| |||| ||||| ||||||| ||| ||||| ||||||||||||| ||||||| ||   ||  ||    
T  8026953 cactgcaaaaaaaaaaaaaaaaaattgctcactaataacatatttttgcattccaatttaattcat-aaataatgtattggtcaagtggtttgggaaaac 8026855  T
Q  275 attgtaaataggtgggagcaccctggttcaattcccaggggtgataattttaatttttaatgatttt 341  Q
    |||  ||||| ||||| |||  |  |||| ||||||| | |||||||||||||||||||||||||||    
T  8026854 atttcaaataagtgggtgcattcaagttcgattcccacgagtgataattttaatttttaatgatttt 8026788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 111 - 365
Target Start/End: Complemental strand, 13845557 - 13845306
Alignment:
Q  111 actacttcataattatacacatataaaatgannnnnnnnnnnnactaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 210  Q
    |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13845557 actacttcataattatacacatataaaatgatttttttttt--actaaagctaggttataaaggcactgcaaataaaaataaaataatttgctcactaat 13845460  T
Q  211 accataattttgaattccaaattatttcataaaataatgtattgatcaagtgattccagagtacattgtaaataggtgggagcaccctggttcaattccc 310  Q
    | |||||||||||||||||||||||||||||||  ||||||||||||||||| ||   ||||||||| |||||||||| |||||||| ||||||||||||    
T  13845459 aacataattttgaattccaaattatttcataaa--aatgtattgatcaagtggttatggagtacattttaaataggtgagagcacccaggttcaattccc 13845362  T
Q  311 aggggtgataattttaatttttaat-gattttgtcaaacatttcaactaaattgga 365  Q
    ||||||||||||||||||||||||| | ||||| ||| |  |||||||||||||||    
T  13845361 aggggtgataattttaatttttaatggtttttgccaagctgttcaactaaattgga 13845306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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