View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2138_low_17 (Length: 384)
Name: NF2138_low_17
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_17 |
 | |
|
| [»] scaffold0055 (8 HSPs) |
| | |
|
| [»] scaffold0052 (9 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0515 (1 HSPs) |
| | |
|
| [»] scaffold0306 (1 HSPs) |
| | |
|
| [»] scaffold0152 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0055 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 41869 - 41513
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41869 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
41770 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41769 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
41670 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41669 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
41570 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41569 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
41513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 66740 - 66384
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66740 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
66641 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66640 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
66541 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66540 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
66441 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66440 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
66384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 69572 - 69216
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69572 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
69473 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69472 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
69373 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69372 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
69273 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69272 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
69216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 80118 - 79762
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80118 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
80019 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80018 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
79919 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79918 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
79819 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79818 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
79762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 51117 - 50761
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51117 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
51018 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51017 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
50918 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50917 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
50818 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
50817 |
cttagagggactatggccgcttaggccatggaagtttgaggcaataacaggtctgtg |
50761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 32555 - 32199
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32555 |
atgagaaataaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaaaggcaccaccaggagtggagcctgcggc |
32456 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32455 |
ttaatttgactcaacaaggggaaacttaccaggtccagacatagtaaggattgacagattgagagctctttcttgattctatgggtggtggtgcgtggcc |
32356 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32355 |
gttcttagttggtggagcgatttgtctggttaattccgttaatgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
32256 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32255 |
cttagaaggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
32199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 47 - 374
Target Start/End: Original strand, 71545 - 71872
Alignment:
| Q |
47 |
gggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttac |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71545 |
gggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttac |
71644 |
T |
|
| Q |
147 |
caggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggccgttcttagttggtggagcgatttgtctgg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71645 |
caggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggccgttcttagttggtggagcgatttgtctgg |
71744 |
T |
|
| Q |
247 |
ttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccac |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71745 |
ttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccac |
71844 |
T |
|
| Q |
347 |
ggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
71845 |
ggaagtttgaggcaataacaggtctgtg |
71872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #8
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 4564 - 4871
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4564 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
4663 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4664 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
4763 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4764 |
gttcttagttggtggagcgatttgtctagttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
4863 |
T |
|
| Q |
318 |
cttagagg |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
4864 |
cttagagg |
4871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 6472 - 6116
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6472 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
6373 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6372 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
6273 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6272 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
6173 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6172 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
6116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 27504 - 27148
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27504 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
27405 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27404 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
27305 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27304 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
27205 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27204 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
27148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 35188 - 35544
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35188 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
35287 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35288 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
35387 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35388 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
35487 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35488 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
35544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 48024 - 47668
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48024 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
47925 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47924 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
47825 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47824 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
47725 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47724 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
47668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 25642 - 25286
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25642 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
25543 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25542 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
25443 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25442 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
25343 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25342 |
cttagagggactatggccgcttaggccatggaagtttgaggcaataacaggtctgtg |
25286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 63510 - 63866
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
63510 |
atgagaaataaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaaaggcaccaccaggagtggagcctgcggc |
63609 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
63610 |
ttaatttgactcaacaaggggaaacttaccaggtccagacatagtaaggattgacagattgagagctctttcttgattctatgggtggtggtgcgtggcc |
63709 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63710 |
gttcttagttggtggagcgatttgtctggttaattccgttaatgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
63809 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63810 |
cttagaaggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
63866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 79971 - 79664
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79971 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
79872 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79871 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
79772 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79771 |
gttcttagttggtggagcgatttgtctagttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
79672 |
T |
|
| Q |
318 |
cttagagg |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
79671 |
cttagagg |
79664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 261 - 374
Target Start/End: Original strand, 30577 - 30690
Alignment:
| Q |
261 |
gaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggca |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30577 |
gaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccatggaagtttgaggca |
30676 |
T |
|
| Q |
361 |
ataacaggtctgtg |
374 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30677 |
ataacaggtctgtg |
30690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 42351 - 42248
Alignment:
| Q |
271 |
tcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42351 |
tcagcctgctaaatagctatgtggaggtaaccctccacggccagctttttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtc |
42252 |
T |
|
| Q |
371 |
tgtg |
374 |
Q |
| |
|
|||| |
|
|
| T |
42251 |
tgtg |
42248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 46286 - 45930
Alignment:
| Q |
18 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46286 |
atgagaaatcaaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggc |
46187 |
T |
|
| Q |
118 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46186 |
ttaatttgactcaacacggggaaacttaccaggtccagacatagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggcc |
46087 |
T |
|
| Q |
218 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46086 |
gttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagctt |
45987 |
T |
|
| Q |
318 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45986 |
cttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
45930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 37967529 - 37967365
Alignment:
| Q |
202 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
301 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
37967529 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
37967430 |
T |
|
| Q |
302 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
366 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37967429 |
cctccacagccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
37967365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 59 - 288
Target Start/End: Complemental strand, 13643855 - 13643630
Alignment:
| Q |
59 |
gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagaca |
158 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||| |||||||||| || ||| | || |
|
|
| T |
13643855 |
gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagcctacggcgtaatttgactcaacacagggaaacttatcaagtc--ggca |
13643758 |
T |
|
| Q |
159 |
tagtaaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgtta |
258 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || | |||||||||||| |||||||||| | ||| ||||| |
|
|
| T |
13643757 |
cagtaaggattgacaaactgagagctctttcttgattctattagtggtggtgcatgattgt--taagttggtggagcaatttgtctggattatttcgtta |
13643660 |
T |
|
| Q |
259 |
acgaacgagacctcagcctgctaaatagct |
288 |
Q |
| |
|
|| ||| |||||||||| || ||||||||| |
|
|
| T |
13643659 |
acaaacaagacctcagcttgttaaatagct |
13643630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 14379964 - 14380058
Alignment:
| Q |
276 |
ctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtc |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14379964 |
ctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttagaccacggaagtttgaggcaataacaggtc |
14380058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 7550 - 7632
Alignment:
| Q |
298 |
taaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtgctgctc |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
7550 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataacaggtctgtgatgctc |
7632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 7560 - 7642
Alignment:
| Q |
298 |
taaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtgctgctc |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
7560 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataacaggtctgtgatgctc |
7642 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 298 - 374
Target Start/End: Original strand, 25171 - 25247
Alignment:
| Q |
298 |
taaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25171 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataacaggtctgtg |
25247 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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