View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2138_low_19 (Length: 373)
Name: NF2138_low_19
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 357
Target Start/End: Original strand, 55506458 - 55506791
Alignment:
| Q |
9 |
cgaacaacaattcctaaatttagactttgttgatgttgtttgctttgtactcttgttcccttgccatggtttatccccctggattttcctgacaaggtct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55506458 |
cgaacaacaattcctaaatttagactttgttgatgttgtttgctttgtactcttgttcccttgccatggtttatccccctggattttcctgacaaggtct |
55506557 |
T |
|
| Q |
109 |
tattgatgcaaatgttgagttcgcttcgttcgttttggtctatcgccgtctttctatcattcgctttattttcataatatctctagaatggcggctaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55506558 |
tattgatgcaaatgttgagttcgcttcgttcgcacaagt--------gtctttctatctttctctttattttcataatatctctagaatggcggctaagg |
55506649 |
T |
|
| Q |
209 |
ggtactaaacgtagttgtaatgtcttgattttgtctttgcacactctgccgttgaaagaaggttagatttttaatttcttttcctagacctagttcatgt |
308 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
55506650 |
ggtact-aacgtagttgtaatgtcttgattttgtctttgcacactctgctgttgaaagaaggttagatttttaattt------cgactcctagttcatgt |
55506742 |
T |
|
| Q |
309 |
taaaagtcatcttaaatgtacattcaaaatcaaagacgcaaacattttg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55506743 |
taaaagtcatcttaaatgtacattcaaaatcaaagacacaaacattttg |
55506791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 43996514 - 43996561
Alignment:
| Q |
91 |
attttcctgacaaggtcttattgatgcaaatgttgagttcgcttcgtt |
138 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
43996514 |
attttcctcacaaggtcttattgatgtgaatgttgagttctcttcgtt |
43996561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University