View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_2 (Length: 581)
Name: NF2138_low_2
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 10 - 569
Target Start/End: Original strand, 20370404 - 20370959
Alignment:
| Q |
10 |
aatatggtttgatgagagtttaggtnnnnnnnttaaaatatgtagtcgatttggttaaagtattgatgatttaaaagaaagtctacataacatggcatat |
109 |
Q |
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| T |
20370404 |
aatatggtttgatgagagtttaggtaaaaaatttaaaatatgtagtcgatttggttaaagtattgacgatttaaaagaaagtctacataacatggcatat |
20370503 |
T |
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| Q |
110 |
atagctgtgttcgtaggtggaaaatgggataatttactatgtgccgaaaagggatatttggtattttatcaaatagggcaaattattattaagtgtcaaa |
209 |
Q |
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| T |
20370504 |
--agctgtgttcgtaggtggaaaatgggatgatttattatgtgccaataaggaagatttggtattttatcaaatagggcaaattattattaagtgtcaaa |
20370601 |
T |
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| Q |
210 |
tgacgcaattagttttaaaatgataaatgagacaattaaattatcatgccaattgatgcaatattgagatcatggcctatgtgcatatcatggatcattt |
309 |
Q |
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| T |
20370602 |
tgacgcaattagttttaaaatgataaatgagacaattaaattatcatgccaattgatgcaatattgagatcatggtctatgtgcatatcatggatcattt |
20370701 |
T |
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| Q |
310 |
ggataaagttctgttttttattgattttattcgtatttggctttaatttgaactttatgtggcaggtgttttacaattcttcttgccttgtgtttttatg |
409 |
Q |
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| T |
20370702 |
ggataaagttctgtttttaattgattttattcgtatttggc-----tttgaactttatgtggcaggtgttttacaattcttcttgccttgtgtttttatg |
20370796 |
T |
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| Q |
410 |
tctacatggttgtaatttgtggttaattatatggttttcactaacatcctttaataccaacattttaggtactaaagaagatacgcatgcttgaagttat |
509 |
Q |
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| T |
20370797 |
tctatatggttgtaatttgtggttaattatatggttttcactaacatcctttaataccaacattttagatactaaagaagatatgcatgcttgaagttat |
20370896 |
T |
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| Q |
510 |
tggttgaagcatgta---cggtggcgaaaagagatttttaaaaaataaagacgttatgtatga |
569 |
Q |
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| T |
20370897 |
tggttgaagcgtgtatggtggtggcgaaaagagatttttaaaaaataaagacgttatgtatga |
20370959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 110 - 330
Target Start/End: Complemental strand, 20404818 - 20404598
Alignment:
| Q |
110 |
atagctgtgttcgtaggtggaaaatgggataatttactatgtgccgaaaagggatatttggtattttatcaaatagggcaaattattattaagtgtcaaa |
209 |
Q |
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| T |
20404818 |
atagttgtgttcataggtggcaaatgaggtgatttactatgtactgaatatggagatttgatattttctcaaatagggaaaattattatcaactgccaaa |
20404719 |
T |
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| Q |
210 |
tgacgcaattagttttaaaatgataaatgagacaattaaattatcatgccaattgatgcaatattgagatcatggcctatgtgcatatcatggatcattt |
309 |
Q |
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| T |
20404718 |
tgacgcgattagttttcaaatgataaatgagacagttagtttttcatgccaattgacgcgatattcagatcatggtttatgttcatatcatggatcattt |
20404619 |
T |
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| Q |
310 |
ggataaagttctgttttttat |
330 |
Q |
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| T |
20404618 |
gtttaaatttccgttttttat |
20404598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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