View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_20 (Length: 366)
Name: NF2138_low_20
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 32824234 - 32823895
Alignment:
| Q |
17 |
cactcctaatcatctacatgatcttattctcgttgaaagagaaggatatgcgtttttatttaatttagagtctgaaatattgccatatttttgtacgcat |
116 |
Q |
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| T |
32824234 |
cactcctaatcatctacatgatcttattctcgttgaaagagaaggatatgcgtttttatttaatttagagtctgaaatattgccatatttttgtacgcat |
32824135 |
T |
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| Q |
117 |
tgccaaaatataggtcattaagttgaaaatgttgaaaattgaaatctcaaaggtataaaccttcatgttaattggagacactctttctttacctatcaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32824134 |
tgccaaaatataggtcattaagttgaaaatgttgaaaattgaaatctcaaaggtataaaccttcatgttaatgggagacactctttctttacctatcaca |
32824035 |
T |
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| Q |
217 |
aagtacacggtttgttatctttaagttcaactaaaatttctttaaagtctcccgacttagagtcatcttcttctaaaacttcaaaggaaacgaagttatc |
316 |
Q |
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|||||||||||||||||| |||||||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32824034 |
aagtacacggtttgttat-tttaagttcaacaaatttttttttaaagtctcccgactcagagtcatcttcttctaaaacttcaaaggaaacaaagttatc |
32823936 |
T |
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| Q |
317 |
ctttcttccttagagaattttggcactattttattcatctc |
357 |
Q |
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||||||||||| |||||||||||||||||||||||| |||| |
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| T |
32823935 |
ctttcttccttggagaattttggcactattttattcttctc |
32823895 |
T |
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