View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_24 (Length: 344)
Name: NF2138_low_24
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 97 - 328
Target Start/End: Complemental strand, 27201856 - 27201625
Alignment:
| Q |
97 |
ttaagagaggtaactttataagtgcctcaaatatggaatccattcattataagaaaaagggacagatccttacagagtaatcatttctgttttgatcgac |
196 |
Q |
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| T |
27201856 |
ttaagagaggtaactttatatgtgcctcaaatatggaatccattcattgtatgaaaaagggatagatccttacagagtaatcatttctgttttgatcgac |
27201757 |
T |
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| Q |
197 |
caaaacattaattgaaatagtgccagaccaccaaagaaatctccaaatagctgcttgctgaagatcaaccacttgcctatgaccctcatcaaccaaaact |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27201756 |
caaaacattaattgaaatagtgccagaccaccaaagaaatctccaaatagctgcttgctgaagatcaaccacttgcctatgaccctcatcaaccaaaact |
27201657 |
T |
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| Q |
297 |
tttctggatatcacttcctgaccaagaaaaac |
328 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27201656 |
tttctggatatcacttcctgaccaagaaaaac |
27201625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 27201972 - 27201880
Alignment:
| Q |
5 |
atgaatgtgtgttgattaattgaaattctggacatattcttcaattttaggtagttggtaaatgtcagtaacaacaataacaatcatttgctt |
97 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27201972 |
atgaatgtgtgttgattaattgaaattctagacatattcttcaattttaggtagttggtaaatgtcagtaacaacaataacaatcatttgctt |
27201880 |
T |
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