View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_26 (Length: 328)
Name: NF2138_low_26
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 37779320 - 37779595
Alignment:
| Q |
1 |
acagacaagatccaaaattcattcattctattactattgaggaggttaggagagaacatctctctggttaggagtttctgactcttgaaatgtgatccct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37779320 |
acagacaagatccaaaattcattcattctattactattgagtaggttaggagagaacatctctctggttaggagtttctgactcttgaaatgtgatccct |
37779419 |
T |
|
| Q |
101 |
tcattgtagagcttctatgctcattatttccattcaataatatacatatttcatcaatctgtttgtgatttctattaatgaccttagaggaagctcttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37779420 |
tcattgtagagcttctatgctcattatttccattcaataatatacatatttcatcaatctgtttgtgatttctattaatgaccttagaggaagctcttta |
37779519 |
T |
|
| Q |
201 |
cttgaaggataagggaatcaaatcaacaagaacaaaacctgaaatccatggccttaata-cgtgcaccaaattcac |
275 |
Q |
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| T |
37779520 |
cttgaaggataagggaatcaaatcaacaagaacaaaacctgaagtccatggccttaatatcgtgcaccaaattcac |
37779595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 3382211 - 3382150
Alignment:
| Q |
103 |
attgtagagcttctatgctcattatttccattcaataatatacatatttcatcaatctgttt |
164 |
Q |
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| T |
3382211 |
attgtagagcttctatgctcatcatttacattgaataatacacatatttcatcattctgttt |
3382150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 38386795 - 38386837
Alignment:
| Q |
268 |
aaattcacaaacaccaacacataatgttcaaatagctacaaac |
310 |
Q |
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| T |
38386795 |
aaattcacaaacaccaacacataatgtcaaaataactacaaac |
38386837 |
T |
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