View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2138_low_27 (Length: 327)

Name: NF2138_low_27
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2138_low_27
NF2138_low_27
[»] chr1 (2 HSPs)
chr1 (9-327)||(47183991-47184310)
chr1 (16-245)||(47197108-47197340)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 47184310 - 47183991
Alignment:
Q  9 gaagaatattccagcaagcaacatagtaagtttgcgtccaagctttctagttacaggggatgcaatcatggaggctaccagggcagcgatgtaaagagaa 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  47184310 gaagaaaattccagcaagcaacatagtaagtttgcgtccaagctttctagttaccggggatgcaatcatggaggctaccaaggcagcgatgtaaagagaa 47184211  T
Q  109 gatgtgaacaattgaagcatttgattatcatatttgcagtagttactttcatttttaggtgcttgtatcgattcgtatatttgtggaaaacactctttca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  47184210 gatgtgaacaattgaagcatttgattatcatatttgcagtagttactttcatttttaggtgcttgtatccattcgtatatttgtggaaaaaactctttca 47184111  T
Q  209 agaaactaggcattgatgtcacaccccctgcattcattcgttcactcacattaaatataataatgcttatat-ttttatcattaccattcagaatccaag 307  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47184110 agaaactaggcattgatgtcacaccccctgcattcgttcattcactcacattaaatataataatgcttatattttttatcattaccattcagaatccaag 47184011  T
Q  308 gtaaatggttttaggtatta 327  Q
    ||||||||||||||||||||    
T  47184010 gtaaatggttttaggtatta 47183991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 47197340 - 47197108
Alignment:
Q  16 attccagcaagcaacatagtaagtttgcgtccaagctttctagttacaggggatgcaatcatggaggctaccagggcagcgatgtaaagagaagatgtga 115  Q
    ||||||||||||||||||||  |||||||||| |||||||| |||||||||||||| |||||||| ||||||| ||| || | ||||||||| |||||||    
T  47197340 attccagcaagcaacatagtttgtttgcgtcctagctttctggttacaggggatgcgatcatggaagctaccaaggccgcaaggtaaagagatgatgtga 47197241  T
Q  116 acaattgaagcatttgattatcatatttgcagtagttactttca---tttttaggtgcttgtatcgattcgtatatttgtggaaaacactctttcaagaa 212  Q
    ||||||||||| | ||||| ||||||||||||||||| ||||||     | || |  ||||| ||  || |||||  | ||||||  ||| || ||||||    
T  47197240 acaattgaagcttctgattgtcatatttgcagtagttgctttcaagtactgtatgctcttgtgtccttttgtatacatctggaaagaacttttgcaagaa 47197141  T
Q  213 actaggcattgatgtcacaccccctgcattcat 245  Q
    ||| |||||||||||||||||||||||||||||    
T  47197140 acttggcattgatgtcacaccccctgcattcat 47197108  T

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