View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_33 (Length: 287)
Name: NF2138_low_33
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 7286689 - 7286827
Alignment:
| Q |
138 |
ttgaacacctcaatttcggtctctatttgcagaccttatgcacattttcttaaatttttataattcaattttgtacttcttcattcttgattacctttcg |
237 |
Q |
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| T |
7286689 |
ttgaacacctcaatttcggtctctatttgcagaccttatgcacattttcttaaatttttataattcaattttctacttcttcgttcttgattacctttcg |
7286788 |
T |
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| Q |
238 |
agatatttgtggatatttttgaagtttcaatatattcat |
276 |
Q |
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| T |
7286789 |
agatatttgtggatatttttgaagtttcaatatattcat |
7286827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 7286404 - 7286488
Alignment:
| Q |
16 |
atttattttaccaggaagttcgggctctatatacaaaggagggcaagctaaaattaaccaagagtaaatataaaaactggaaaga |
100 |
Q |
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| T |
7286404 |
atttattttaccaggaagtccgggtactatatacaaaggagggcaagctaaaattaaccaagagtcaatataaaaactggaaaga |
7286488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 8357411 - 8357372
Alignment:
| Q |
237 |
gagatatttgtggatatttttgaagtttcaatatattcat |
276 |
Q |
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| T |
8357411 |
gagagatttgtggatatttttgcagtttcaatatattcat |
8357372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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