View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_38 (Length: 261)
Name: NF2138_low_38
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 1924053 - 1923854
Alignment:
| Q |
35 |
aaatattaaagtaaaattgaatccacccaaccacctaaacacatatttactgcacacttgatgatatagaaaaggacataaccaaaaacgtgagaatcct |
134 |
Q |
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| T |
1924053 |
aaatattaaagtaaaattgaatccacccaaccacctaaacacatatttactgcacacttgatgatctagaaaaggacatcaccaaaaacgtga------- |
1923961 |
T |
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| Q |
135 |
actcaagaggtcatcacagaaaaatctcataatatccacctacgcttgccgacatgcataaaaatctattgaaactatatttcagggacaaaccatgtag |
234 |
Q |
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| T |
1923960 |
--tcaagaggtcatcacagaaaaatctcataatatccacctacgcttgccgacatgcataaaaatctattgaaactatatttcagggacaaaccatgtag |
1923863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 17499224 - 17499113
Alignment:
| Q |
65 |
ccacctaaacacatatttactgcacacttgatgatatagaaaaggacataaccaaaaacgtgagaatcctactcaagaggtcatcacagaaaaatctcat |
164 |
Q |
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| T |
17499224 |
ccacctaaacacatagttactgcacacttgatgatctagaaaaggacatcaccaaaaacgtgagaatcctactcaagaggtcatcacagaaaaatctcat |
17499125 |
T |
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| Q |
165 |
aatatccaccta |
176 |
Q |
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| T |
17499124 |
aatatccaccta |
17499113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 17553990 - 17554101
Alignment:
| Q |
65 |
ccacctaaacacatatttactgcacacttgatgatatagaaaaggacataaccaaaaacgtgagaatcctactcaagaggtcatcacagaaaaatctcat |
164 |
Q |
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| T |
17553990 |
ccacctaaacacatagttactgcacacttgatgatctagaaaaggacatcaccaaaaacgtgagaatcctactcaagaggtcatcacagaaaaatctcat |
17554089 |
T |
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| Q |
165 |
aatatccaccta |
176 |
Q |
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| T |
17554090 |
aatatccaccta |
17554101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 17498998 - 17498951
Alignment:
| Q |
185 |
gacatgcataaaaatctattgaaactatatttcagggacaaaccatgt |
232 |
Q |
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| T |
17498998 |
gacatgcataaaaatctattgaaactatatttcaggaacaaaccatgt |
17498951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 17554216 - 17554263
Alignment:
| Q |
185 |
gacatgcataaaaatctattgaaactatatttcagggacaaaccatgt |
232 |
Q |
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| T |
17554216 |
gacatgcataaaaatctattgaaactatatttcaggaacaaaccatgt |
17554263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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