View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2138_low_40 (Length: 257)
Name: NF2138_low_40
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_40 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 24391835 - 24391997
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtgatgtgcaagtca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24391835 |
actaaatcattctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtgatgtgcaagtca |
24391934 |
T |
|
| Q |
101 |
caccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattgg |
163 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24391935 |
caccaaggattccattgtatcttgaaggggattcgccggtataacccttttgcatccggttgg |
24391997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 48779974 - 48779743
Alignment:
| Q |
3 |
taaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-tgtgcaagtca |
100 |
Q |
| |
|
|||| ||||| || |||||||||||| | || | ||| ||||||||||||||||| ||||||||||||| | |||| | ||||||||| ||||||||||| |
|
|
| T |
48779974 |
taaatcattcattattttctctagtgcacgacataaactgacataactttattctctaaactatcattgattgatatgcttggtgtgaatgtgcaagtca |
48779875 |
T |
|
| Q |
101 |
caccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagc |
200 |
Q |
| |
|
| ||| |||| ||| |||||||||||||||||| ||| |||| ||||||||||||| |||||| ||||||| |||| ||||||||| |||||||||| |
|
|
| T |
48779874 |
cgtcaatgatttcatagtatcctgaaggggattcaccgatata-cccttttgcatccaattggcataactggcagaggcgaatcgaacataaaggttagt |
48779776 |
T |
|
| Q |
201 |
gtgtcccacacacgctttggaatttatgtgcac |
233 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||| |
|
|
| T |
48779775 |
gtatcccacacacgctttgaaatttatatgcac |
48779743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 47078152 - 47077960
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtc |
99 |
Q |
| |
|
|||||| ||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||| ||||| || |||||||||| | |||| ||||| |
|
|
| T |
47078152 |
actaaatcattctttcttttttgtagtgtacgagagaaattgacagaactttattctgtaaactaacattg---at-cgtttggtgtaaatgtgtaagtc |
47078057 |
T |
|
| Q |
100 |
acaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtta |
198 |
Q |
| |
|
|| |||||||||||| ||||||| ||||||||| | | | ||||||||||||||||||| | ||| |||||| | |||| ||| |||||||||| |
|
|
| T |
47078056 |
acgtcaaggattccatggtatcctaaaggggatttgtc--aaatacccttttgcatccgattgacataattggtggggaagaatagaatctaaaggtta |
47077960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 20251410 - 20251654
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagt |
98 |
Q |
| |
|
|||||| |||| |||||||||| ||||| | |||||||||||||| ||||||||| ||||||||||||||| ||||||| ||| |||| |||| |||| |
|
|
| T |
20251410 |
actaaatcattatttcttttctgtagtgcacgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaagg |
20251509 |
T |
|
| Q |
99 |
cacaccaaggattccattgtatcctgaa-ggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtt |
197 |
Q |
| |
|
|||| ||| ||||| || ||||||||| |||||||| || |||| |||| |||||||||| ||| | | ||| || | || ||| ||| ||||| || |
|
|
| T |
20251510 |
cacatcaatgattcaatcatatcctgaagggggattcaccagtat-acccctttgcatccggttgacattactagtaggggcaaatggaatctaaatatt |
20251608 |
T |
|
| Q |
198 |
agcgtgtcccacacacgctttggaatttatgtgcacttttcttcatg |
244 |
Q |
| |
|
|| |||| | |||||||||||| |||||||||| ||| ||| ||||| |
|
|
| T |
20251609 |
agtgtgt-ctacacacgctttgaaatttatgtgtactcttcatcatg |
20251654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24129459 - 24129391
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcat |
69 |
Q |
| |
|
|||||| | ||||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24129459 |
actaaatctttctttcttttctctagtgcacggaagaaattgacataactttattatgtaaactatcat |
24129391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 24129298 - 24129202
Alignment:
| Q |
147 |
cttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcat |
243 |
Q |
| |
|
||||| |||| | ||||| |||||||||| || ||||| || ||||| ||| ||||||| |||| ||||||||||||||||||||||||| |||| |
|
|
| T |
24129298 |
cttttacatctggttggcataactggtgggggagaatcaaagttaaagattaatgtgtcccgcacatgctttggaatttatgtgcacttttcatcat |
24129202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 27538209 - 27538101
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgt-gatgtgcaagt |
98 |
Q |
| |
|
|||||| |||||||| |||||||| || || ||||||||||||||||||| ||||||||||| |||||| |||||| |||| || | |||||||||| |
|
|
| T |
27538209 |
actaaatcattctttaatttctctaatgcataagagaaattgacataacttaattctgtaaacggtcattgatcgatatgtttagtataaatgtgcaagt |
27538110 |
T |
|
| Q |
99 |
cacaccaag |
107 |
Q |
| |
|
|||| |||| |
|
|
| T |
27538109 |
cacatcaag |
27538101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 52653774 - 52654007
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtc |
99 |
Q |
| |
|
|||||| ||||||| ||||||||||||| | ||| ||||||||| ||||||||||||||||||| |||||||||||| ||| ||||| |||||||||| |
|
|
| T |
52653774 |
actaaatcattcttacttttctctagtgcacgaggaaaattgacagaactttattctgtaaactaccattgtcgatacacttgatgtgaatgtgcaagtc |
52653873 |
T |
|
| Q |
100 |
acaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttag |
199 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| || |||| ||||||||||||||| |
|
|
| T |
52653874 |
acgtcaaggattccattgtatcctgaaggggattcgccggtataaccattttgcatccggttggcataactggtgagggcgaattgaacctaaaggttag |
52653973 |
T |
|
| Q |
200 |
cgtgtcccacacacgctttggaatttatgtgcac |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
52653974 |
tgtgtcccacacacgctttggaatttatgtgcac |
52654007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33709830 - 33710057
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtc |
99 |
Q |
| |
|
|||||| ||||||||||||||||||||| | |||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |
|
|
| T |
33709830 |
actaaatcattctttcttttctctagtgcaccagagaatttgacagaactttattctgtaaactaccattgtcgatacgcttggtgtgaatgtgcaagtc |
33709929 |
T |
|
| Q |
100 |
acaccaaggattccattgtatcctgaaggggattcgccggtata-acccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtta |
198 |
Q |
| |
|
|| ||||||||| || ||||||| ||||||||| ||||||||| ||||||||||||||| ||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
33709930 |
acgtcaaggattctatcgtatcctaaaggggattagccggtatatacccttttgcatccggttgacataactggtggaggtgaatcgatcctaaaggtta |
33710029 |
T |
|
| Q |
199 |
gcgtgtcccacacacgctttggaattta |
226 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
33710030 |
gtgtgtcccacacacgctttggaattta |
33710057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 40574428 - 40574196
Alignment:
| Q |
3 |
taaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| | |||||| || ||||| |||||||||||| |
|
|
| T |
40574428 |
taaatcattctttcttttctctagtgcacgagagaaattgacagaactttattctgtaaactatcattgattgatacgcttcgtgtgaatgtgcaagtca |
40574329 |
T |
|
| Q |
101 |
caccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagc |
200 |
Q |
| |
|
| ||| |||||||| |||||||||||| |||||| | ||| || |||||||||| ||| | | |||||||| |||||||| | | |||||||||| |
|
|
| T |
40574328 |
cgtcaaagattccatagtatcctgaaggtaattcgctgatat-gccattttgcatccaattaacattactggtgggggtgaatcaagcttaaaggttagt |
40574230 |
T |
|
| Q |
201 |
gtgtcccacacacgctttggaatttatgtgcact |
234 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||| |
|
|
| T |
40574229 |
gtgtcccacatacacttcagaatttatgtgcact |
40574196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 16729781 - 16729849
Alignment:
| Q |
3 |
taaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg |
71 |
Q |
| |
|
|||| ||||||||||||| | ||||| | || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16729781 |
taaatcattctttcttttatttagtgcacgaagaaaattgacataactttattttgtaaactatcattg |
16729849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 23686176 - 23686213
Alignment:
| Q |
189 |
ctaaaggttagcgtgtcccacacacgctttggaattta |
226 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
23686176 |
ctaaaggttagcgtgtcccacacacggtttcgaattta |
23686213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 24058413 - 24058450
Alignment:
| Q |
189 |
ctaaaggttagcgtgtcccacacacgctttggaattta |
226 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
24058413 |
ctaaaggttagcgtgtcccacacacggtttcgaattta |
24058450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 12729399 - 12729635
Alignment:
| Q |
9 |
attctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtcacaccaag |
107 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |||||||||| |||||||| |||||||||| | ||||||||| ||||||||||| |||| |
|
|
| T |
12729399 |
attctttcttttctctagtgcacgagagaaattgacagaactttattcagtaaactacaattgtcgatatgcttggtgtgaatgtgcaagtcatgtcaag |
12729498 |
T |
|
| Q |
108 |
gattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtccc |
207 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
12729499 |
gatttcatcgtatcctgaaggggaatcgccggtataacccttttgcatccggttggcataactggtggaggcgaatcgtacctaaaggttagtgtgtccc |
12729598 |
T |
|
| Q |
208 |
acacacgctttggaatttatgtgcacttttcttcatg |
244 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||| ||||| |
|
|
| T |
12729599 |
acacactctttggaattcatgtgtacttttcatcatg |
12729635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 44729086 - 44729321
Alignment:
| Q |
8 |
cattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-tgtgcaagtcacacca |
105 |
Q |
| |
|
||||||||| |||| |||||| | |||||| ||||||| ||| ||||||||||||||||||| |||||||| ||||| ||| |||||||||||| || |
|
|
| T |
44729086 |
cattctttcatttccctagtgcacgagagagattgaca--actacattctgtaaactatcattgatcgatacgcttggtatgaatgtgcaagtcacgtca |
44729183 |
T |
|
| Q |
106 |
aggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtc |
205 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||| | | ||||||| |||| |||||||||| || || |
|
|
| T |
44729184 |
aggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatc |
44729283 |
T |
|
| Q |
206 |
ccacacacgctttggaatttatgtgcacttttcttcat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
44729284 |
ccacacacgctttggaatttatgtgcactcttcatcat |
44729321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 14546394 - 14546294
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagt |
98 |
Q |
| |
|
|||||| |||||||||||||||||| || || ||||||||||||||||||||| | |||||| || ||||| |||||| |||||||||| |||||||||| |
|
|
| T |
14546394 |
actaaatcattctttcttttctctaatgaatcagagaaattgacataactttagtatgtaaagtaccattgatcgata-gtttggtgtgaatgtgcaagt |
14546296 |
T |
|
| Q |
99 |
ca |
100 |
Q |
| |
|
|| |
|
|
| T |
14546295 |
ca |
14546294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 28696091 - 28696007
Alignment:
| Q |
144 |
acccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatg |
228 |
Q |
| |
|
||||||||||||| | ||| | ||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
28696091 |
acccttttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatg |
28696007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 28696195 - 28696113
Alignment:
| Q |
8 |
cattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga |
89 |
Q |
| |
|
|||||||||||||||| || | | ||| ||||||||| ||||||||||| |||| |||||||| || ||||| ||||||||| |
|
|
| T |
28696195 |
cattctttcttttctccagggcacgaggaaaattgacagaactttattctataaattatcattgatcaatacgcttggtgtga |
28696113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 8e-70; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 49061374 - 49061607
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtc |
99 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || |
|
|
| T |
49061374 |
actaaatcattctttcttttctctagtgcacgagggaaattgacaaaactttattctgtaaactaccattgtcgatatgtttggtgtgaatgtgcaaatc |
49061473 |
T |
|
| Q |
100 |
acaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttag |
199 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||| || ||||||||||||||| ||| |
|
|
| T |
49061474 |
acgtcaaggattccattgtattctgaaggggattcgtcggtataacccttttgcatctagttggcataactggtgggggcgaatcgaacctaaagactag |
49061573 |
T |
|
| Q |
200 |
cgtgtcccacacacgctttggaatttatgtgcac |
233 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| |
|
|
| T |
49061574 |
tgtttcccacacacgctttagaatttatgtgcac |
49061607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 49053794 - 49054024
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtc |
99 |
Q |
| |
|
|||||| |||||||||| |||||||||| | ||| ||||||| || ||||||||| ||||||||| ||||||||||| | ||||||||| |||||||||| |
|
|
| T |
49053794 |
actaaatcattctttctcttctctagtgcacgagggaaattggcagaactttattttgtaaactaccattgtcgatatgcttggtgtgaatgtgcaagtc |
49053893 |
T |
|
| Q |
100 |
acaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttag |
199 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||||||||||||| |
|
|
| T |
49053894 |
acgtcaaggatttcattgtatcctgaaggggattcgccggtataacccttttgcatccagttggtataactggtgggggcgaatcgaacctaaaggttag |
49053993 |
T |
|
| Q |
200 |
cgtgtcccacacacgctttggaatttatgtg |
230 |
Q |
| |
|
|| |||||||||||| |||||||||||||| |
|
|
| T |
49053994 |
tgtttcccacacacgcattggaatttatgtg |
49054024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 52282128 - 52282039
Alignment:
| Q |
3 |
taaaccattctttcttttctctagtgtatgagaga--aattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga |
89 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| ||||| || ||||||||| |
|
|
| T |
52282128 |
taaatcattctttcttttctctagtgcatgagagagaaattgacataactttattctgtaaactaccattgatcgatgcgcttggtgtga |
52282039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 50059501 - 50059575
Alignment:
| Q |
8 |
cattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtt |
81 |
Q |
| |
|
|||||||| |||||||||||| | |||||||||| ||| ||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
50059501 |
cattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgtt |
50059575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 17458411 - 17458496
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggt |
85 |
Q |
| |
|
|||||| ||||||||| ||||||||||| | |||| ||| || ||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
17458411 |
actaaatcattctttcatttctctagtgcacgagatgaatagagataactttattttgtaaactatcattgatcgatacgcttggt |
17458496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 42263539 - 42263402
Alignment:
| Q |
8 |
cattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtcacacca |
105 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| |||| |||||| || |||||| || ||||| |||||||| || || || |||||||||||| || |
|
|
| T |
42263539 |
cattctttcttttctctagtgcacgagagaaatcgacaaaactttgttttgtaaattaacattgttcgatacgcttagtatgaatgtgcaagtcatgtca |
42263440 |
T |
|
| Q |
106 |
aggattccattgtatcctgaaggggattcgccggtata |
143 |
Q |
| |
|
| |||| | |||||||||||||||||| ||| |||| |
|
|
| T |
42263439 |
aagattttaaagtatcctgaaggggattcaccgttata |
42263402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 12634497 - 12634555
Alignment:
| Q |
13 |
tttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg |
71 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
12634497 |
tttcttttctttagtgcattagagaaattgacagaactttattctgtaaattaccattg |
12634555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 31286103 - 31286164
Alignment:
| Q |
170 |
tggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgca |
232 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||||| |
|
|
| T |
31286103 |
tggtggaggtgaatcaaacctaaaatttagcgtgt-ttacacacgctttgaaatttatgtgca |
31286164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 12239731 - 12239506
Alignment:
| Q |
9 |
attctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtcacaccaag |
107 |
Q |
| |
|
|||||||||| |||||||| || ||| ||||||||| |||||||||||| |||||| ||||||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
12239731 |
attctttcttatctctagtatactagataaattgacaaaactttattctggaaactaccattgtcgatacgcttggtgtgaatgtgcaagtcacgtcaag |
12239632 |
T |
|
| Q |
108 |
gattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattgg-cgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcc |
206 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||| |||||||||||||| || | | |||||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
12239631 |
gatttcatcgtatcctgaaggggattcgccgacata-cccttttgcatccggtttgacataactggtgggggcgaatcgaacctaaaggttaatgtgtcc |
12239533 |
T |
|
| Q |
207 |
cacacacgctttggaatttatgtgcac |
233 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
12239532 |
cacacacgctttgaaatttatgtgcac |
12239506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 24870428 - 24870647
Alignment:
| Q |
11 |
tctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-tgtgcaagtcacaccaagg |
108 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||| | ||||||||| ||||||||||||||| || ||||| ||||||| | | || |||| || ||| |
|
|
| T |
24870428 |
tctttcttttctctagtgcacgagaaaaattgatagaactttattatgtaaactatcattgatcaatacgcttggtgtaaatatgaaagtaacgtcaata |
24870527 |
T |
|
| Q |
109 |
attccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtccca |
208 |
Q |
| |
|
|| ||| ||||||| | | ||||| ||| ||| |||||||||||||| ||||| |||||||| | || ||||||||| ||||||||||| ||||||| |
|
|
| T |
24870528 |
atatcatagtatcctaatgtggatttgccac-ata-cccttttgcatccggttggcataactggtaggggcgaatcgaacttaaaggttagcatgtccca |
24870625 |
T |
|
| Q |
209 |
cacacgctttggaatttatgtg |
230 |
Q |
| |
|
||| | | ||||||||||||| |
|
|
| T |
24870626 |
tacaagatgtggaatttatgtg |
24870647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 1840661 - 1840893
Alignment:
| Q |
11 |
tctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtcacaccaagg |
108 |
Q |
| |
|
||||||||||||| | || |||||||||||||||| | ||||||| ||||||||||||||| |||||| ||||||||| | ||||| || ||||| |
|
|
| T |
1840661 |
tctttcttttctcaaatgcatgagagaaattgacagatctttattatgtaaactatcattgatcgatatatttggtgtgaacatgcaa--aacgtcaagg |
1840758 |
T |
|
| Q |
109 |
attccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtccca |
208 |
Q |
| |
|
|||||| ||| |||||| |||| || ||||| || ||||||||||| ||||| | |||| |||||| ||||| || |||||||||| || | ||| |
|
|
| T |
1840759 |
attccaaaatattttgaaggagatttgctggtat-tcctttttgcatccggttggcatcactgatggaggcgaatcaaatgtaaaggttagtgtattcca |
1840857 |
T |
|
| Q |
209 |
cacacgctttggaatttatgtgcacttttcttcatg |
244 |
Q |
| |
|
||||| |||| || ||||||| |||||||| ||||| |
|
|
| T |
1840858 |
cacacactttagattttatgtccacttttcatcatg |
1840893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 34091586 - 34091362
Alignment:
| Q |
3 |
taaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcatt-gtcgatacgtttggtgtg-atgtgcaagtca |
100 |
Q |
| |
|
|||| ||||| |||||||||||| || |||||||||||||| | ||||||| | ||||||||| |||| | ||||| |||||||| |||||||||||| |
|
|
| T |
34091586 |
taaatcattcattcttttctctaatgcatgagagaaattgagagaactttactttgtaaactaccattaattcatacgattggtgtgaatgtgcaagtca |
34091487 |
T |
|
| Q |
101 |
caccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagc |
200 |
Q |
| |
|
| ||||||||| || ||| || || || ||| ||| | || || ||||||| ||||||| | ||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
34091486 |
cgtcaaggattctataatattctaaaaggaattggccag-at-acttttttgcaaccgattgacataactggtggaggtgaatcaaacataaaagttagt |
34091389 |
T |
|
| Q |
201 |
gtgtcccacacacgctttggaatttat |
227 |
Q |
| |
|
|||| |||| | |||||||| ||||| |
|
|
| T |
34091388 |
gtgttacacataggctttggagtttat |
34091362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 244
Target Start/End: Complemental strand, 23757212 - 23757043
Alignment:
| Q |
74 |
gatacgtttggtgtga-tgtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactgg |
172 |
Q |
| |
|
|||||||||||||||| |||| | ||||| ||||| | |||| |||| ||||||||||||||| ||||| |||||||||||| | || || ||| ||| |
|
|
| T |
23757212 |
gatacgtttggtgtgaatgtgaatgtcacgtcaagggtcccatattatcttgaaggggattcgccagtata-cccttttgcatctggttagcttaattgg |
23757114 |
T |
|
| Q |
173 |
tggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatg |
244 |
Q |
| |
|
| | ||||||||||||||||| ||||| |||| |||| | ||| ||||||||||| |||| ||| ||||| |
|
|
| T |
23757113 |
tag-ggtgaatcgaacctaaaagttagtatgtcacacataaacttcggaatttatgttcactcttcatcatg |
23757043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 37469058 - 37469110
Alignment:
| Q |
181 |
aatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcac |
233 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
37469058 |
aatcaaacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcac |
37469110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9851559 - 9851328
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtc |
99 |
Q |
| |
|
|||||| || |||||||||||||||||| | |||||| ||||| |||||||||||||||| | ||||||||||||| ||||||||| ||||||| || |
|
|
| T |
9851559 |
actaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgcaaatc |
9851460 |
T |
|
| Q |
100 |
acaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttag |
199 |
Q |
| |
|
||| ||| ||||||| ||||| ||||||||||||||||||||| ||||||||||| || ||||| |||||||| | || |||| ||||||||| ||||| |
|
|
| T |
9851459 |
acattaagtattccatcgtatcttgaaggggattcgccggtata-cccttttgcattcggttggcttaactggtag-ggagaattgaacctaaatgttag |
9851362 |
T |
|
| Q |
200 |
cgtgtcccacacacgctttggaatttatgtgcac |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9851361 |
tgtgtcccacacacgctttggaatttatgtgcac |
9851328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 29006485 - 29006728
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaa-ctatcattgtcgatacgtttggtgtga-tgtgcaagt |
98 |
Q |
| |
|
|||||| ||||| ||||||| ||||||| | |||| || |||||| |||||||||||||||| ||| ||||| ||||||| ||||||||| |||| | || |
|
|
| T |
29006485 |
actaaatcattcattcttttttctagtgcacgagataagttgacagaactttattctgtaaaactaacattgacgatacgcttggtgtgaatgtgtatgt |
29006584 |
T |
|
| Q |
99 |
cacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtta |
198 |
Q |
| |
|
|| ||||||||||||||||| |||||| ||||||||| ||||||||||||||||| | ||| |||| |||| || |||||||||||||| |||| |
|
|
| T |
29006585 |
catgtcaaggattccattgtattctgaagaggattcgccaatataacccttttgcatctggttgataaaactagtgg-ggcgaatcgaacctaaaagtta |
29006683 |
T |
|
| Q |
199 |
gcgtgtcccacacacgctttggaatttatgtgcacttttcttcat |
243 |
Q |
| |
|
| ||||| ||||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
29006684 |
gtgtgtctcacacacgctttgaaatttatgtgcactcttcatcat |
29006728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 15205481 - 15205576
Alignment:
| Q |
148 |
ttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcat |
243 |
Q |
| |
|
|||||||||| | ||| |||||||||| | ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||| ||| |||| |
|
|
| T |
15205481 |
ttttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcactcttcatcat |
15205576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 36203207 - 36203290
Alignment:
| Q |
150 |
ttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcac |
233 |
Q |
| |
|
||||||||| ||||| |||||||||| | ||||||||| |||||||||| ||| ||||||||||| || ||||||||||||| |
|
|
| T |
36203207 |
ttgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaaatttatgtgcac |
36203290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 9080755 - 9080625
Alignment:
| Q |
14 |
ttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtcacaccaaggatt |
111 |
Q |
| |
|
|||||||||||||| | ||||| |||||| | ||||||||| ||||||||| ||||| || |||||||| |||| |||||||||| || |||| ||| |
|
|
| T |
9080755 |
ttcttttctctagtacacgagagcaattgagagaactttattttgtaaactaccattgatctatacgtttaatgtgaatgtgcaagttacgtcaagaatt |
9080656 |
T |
|
| Q |
112 |
ccattgtatcctgaaggggattcgccggtata |
143 |
Q |
| |
|
||| ||||| |||||||| |||| ||||||| |
|
|
| T |
9080655 |
ccaaagtatcatgaagggg-ttcgtcggtata |
9080625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15205365 - 15205434
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcatt |
70 |
Q |
| |
|
|||||| |||| | |||||||| ||||| | ||||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
15205365 |
actaaatcattgtatcttttctttagtgaacaagagaaattaacatgactttattctctaaactatcatt |
15205434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 11931962 - 11932188
Alignment:
| Q |
8 |
cattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtcacaccaa |
106 |
Q |
| |
|
||||||||||||| ||||||| | ||||||| |||||| || |||||||| ||||||| ||||||||||| ||||||||| | |||||||||| ||| |
|
|
| T |
11931962 |
cattctttcttttatctagtgcacgagagaatttgacagaattttattctataaactaccattgtcgataaacttggtgtgaataagcaagtcacatcaa |
11932061 |
T |
|
| Q |
107 |
ggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcc |
206 |
Q |
| |
|
||||| ||| |||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||| |||| || ||||| |||||||||||||| |||||| |
|
|
| T |
11932062 |
ggatttcatcgtatcctgaagggg-ttcgctggtataacccttttgcatccggttggcataactagtgggggcgaatcaaacctaaaggttagtgtgtcc |
11932160 |
T |
|
| Q |
207 |
cacacacgctttggaatttatgtgcact |
234 |
Q |
| |
|
||||| |||||| |||||||||||||| |
|
|
| T |
11932161 |
aacacatgctttgaaatttatgtgcact |
11932188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 28612262 - 28612064
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgt-cgatacgtttggtgtga-tgtgcaagt |
98 |
Q |
| |
|
|||||| ||||||||||| ||||||||| | ||| | |||||||| ||| || || |||| |||| ||||| ||||| | ||||||||| ||| ||||| |
|
|
| T |
28612262 |
actaaatcattctttcttatctctagtgcacgaggggaattgacagaacattgttttgtatactaccattgaacgatatgcttggtgtgaatgtacaagt |
28612163 |
T |
|
| Q |
99 |
cacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtta |
198 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| ||| ||| |||| ||| | ||| | |||||||||| | |||||||||||||||||| |
|
|
| T |
28612162 |
cacgtcaaggattccattgtattctgaaggggattcgccgatat-accattttacatactgttgacataactggtggggaaaaatcgaacctaaaggtta |
28612064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 217757 - 217972
Alignment:
| Q |
9 |
attctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtcacaccaa |
106 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| || ||| ||||| ||||||||| ||||| ||||||| |||||||| ||||||||||| | ||| |
|
|
| T |
217757 |
attctttcttttctctagttcacgagagaaattggcagaacattattttgtaaactaccattgatcgatacacttggtgtgaatgtgcaagtctcttcaa |
217856 |
T |
|
| Q |
107 |
ggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcc |
206 |
Q |
| |
|
||||| ||| |||| ||||||||||||| ||||||||| ||| | ||||| || ||||||| || ||||||| |||||||| ||| ||||| |
|
|
| T |
217857 |
ggatttcatcgtat--------tgattcgccggtat-acccttttgtatcaggttggcatagctggtgggggagaatcgatcctaaagg-tagtttgtcc |
217946 |
T |
|
| Q |
207 |
cacacacgctttggaatttatgtgcact |
234 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
217947 |
cacaca--ctttggaatttatgtgcact |
217972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14219002 - 14218759
Alignment:
| Q |
1 |
actaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagt |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||| ||||||| | ||||||||| ||||||||||||||| | ||||||||||||||| |||| || || |
|
|
| T |
14219002 |
actaaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgtacatgt |
14218903 |
T |
|
| Q |
99 |
cacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtta |
198 |
Q |
| |
|
|| || ||||| || ||||| |||||| ||||| | ||| || ||||||||||| ||| | |||||||||| | |||||||||||||| |||| |
|
|
| T |
14218902 |
caagtcagtgattctatagtatcttgaaggagattcattgatat-actcttttgcatccagttgacataactggtgg-gacgaatcgaacctaaaagtta |
14218805 |
T |
|
| Q |
199 |
gcgtgtcccacacacgctttggaatttatgtgcacttttcttcatg |
244 |
Q |
| |
|
| |||| |||||| |||| ||||||||||||||| || ||||| |
|
|
| T |
14218804 |
gtttgtctaacacacacttttaaatttatgtgcacttgtcatcatg |
14218759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 34681211 - 34681118
Alignment:
| Q |
9 |
attctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtca |
100 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||| ||||||||| |||||||||||||| |||||||| ||| |||| |||||||||||| |
|
|
| T |
34681211 |
attctttcttttctctggtgaacgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca |
34681118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 38327475 - 38327394
Alignment:
| Q |
32 |
gagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtcacaccaaggatt |
111 |
Q |
| |
|
||||||||||| || ||||||||| |||||| || ||||| ||||| ||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
38327475 |
gagagaaattgccaaaactttattatgtaaattaccattgatcgatgcgtttggtgtgaatgtgtaagtcacgtcaaggatt |
38327394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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