View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_44 (Length: 251)
Name: NF2138_low_44
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 36484340 - 36484107
Alignment:
| Q |
4 |
tacaaggagatgcttagacaatgactttactctgaggcttttgttttatttaaggttttcagttt-gggattgggtgcactcatcactgaaactcacgcg |
102 |
Q |
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| T |
36484340 |
tacaaggagatgcttagacaatgactttactctgaggcttttgttttatttaaggttttcaatttggggattgggtgcgctcatcaccaaaactcacgcg |
36484241 |
T |
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| Q |
103 |
gttcaaatttcaaggtcaaattattatattttaaatnnnnnnnnctatgtttaaacaaatttatcttattctgattggacgaccgtgaattgttaaatgt |
202 |
Q |
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| T |
36484240 |
gttcaaatttcaaggtcaaattattatagtttaaa----aaaaattgtatttaaacaaatttgtcttattctaattggacgatcgtgaattgttaaatgt |
36484145 |
T |
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| Q |
203 |
agtttgattgcacgcggagcgatcatgctcaacccttt |
240 |
Q |
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| T |
36484144 |
agtttgattgcacgcggagcgatcatgctcaacccttt |
36484107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 36492109 - 36492032
Alignment:
| Q |
4 |
tacaaggagatgcttagacaatgactttactctgaggcttttgttttatttaaggttttcagtttgggattgggtgca |
81 |
Q |
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| T |
36492109 |
tacaatgagacgcttagacaatgactttattttgaggtttttgttttatttaaggttttgagtttgagattgggtgca |
36492032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 24052453 - 24052390
Alignment:
| Q |
17 |
ttagacaatgactttactct-gaggcttttgttttatttaaggttttcagtttgggattgggtg |
79 |
Q |
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| T |
24052453 |
ttagacaatgactttacttttgaggcttttgttttatttaaggttttgggtttgagattgggtg |
24052390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 36472677 - 36472633
Alignment:
| Q |
25 |
tgactttactctgaggcttttgttttatttaaggttttcagtttgg |
70 |
Q |
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| T |
36472677 |
tgactttactttgaggcttt-gttttatttaaggttttgagtttgg |
36472633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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