View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_55 (Length: 236)
Name: NF2138_low_55
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36484331 - 36484551
Alignment:
| Q |
1 |
tctccttgtatttttcatcctaagaccatgtctctgacaactagttcttgtgtctccatcttcattcttttccttgcctttgtctttcctctctcttgga |
100 |
Q |
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| T |
36484331 |
tctccttgtacttttcatcctaagaccatgtctctgacaactagttctcgtgtctccatcttcattcttttccttgcctttgtctttcctctctcttgga |
36484430 |
T |
|
| Q |
101 |
cagtcgaagaatcttctcttgaaaagattctccgcaaccatggtcttccagctggtctcttccctcgaagtgtgaaatcattcaaatttgatcatcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36484431 |
cagtcgaagaatcttctcttgaaaagattctccgcaaccatggtcttccagctggtctcttccctcgaagtgtgaaatcattcaaatttgatcatcaaat |
36484530 |
T |
|
| Q |
201 |
gggtcatttagaggtacattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36484531 |
gggtcatttagaggtacattt |
36484551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 36492205 - 36492314
Alignment:
| Q |
106 |
gaagaatcttctcttgaaaagattctccgcaaccatggtcttccagctggtctcttccctcgaagtgtgaaatcattcaaatttgatcatcaaatgggtc |
205 |
Q |
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|||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||| |||||| ||||| |||||||| | | |||||||||| |
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| T |
36492205 |
gaagaatcttctcttgaaaagattctccataatcatggccttccagccggtctcttccctcaaagtgtaaaatctttcaaattgg---accaaatgggtc |
36492301 |
T |
|
| Q |
206 |
atttagaggtaca |
218 |
Q |
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| T |
36492302 |
atttagaggtaca |
36492314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 24052562 - 24052672
Alignment:
| Q |
106 |
gaagaatcttctcttgaaaagattctccgcaaccatggtcttccagctggtctcttccctcgaagtgtgaaatcattcaaatttgatcatcaaatgggtc |
205 |
Q |
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||||||||||| |||| | || |||||||||||||||| || ||||| ||||||||||||| |||||||||||| ||||| || | | |||||||||| |
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| T |
24052562 |
gaagaatcttcccttgtagaggttctccgcaaccatggcctcccagcaggtctcttccctcaaagtgtgaaatcgttcaagttgg---accaaatgggtc |
24052658 |
T |
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| Q |
206 |
atttagaggtacat |
219 |
Q |
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|||||||||||||| |
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| T |
24052659 |
atttagaggtacat |
24052672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 36472825 - 36472933
Alignment:
| Q |
107 |
aagaatcttctcttgaaaagattctccgcaaccatggtcttccagctggtctcttccctcgaagtgtgaaatcattcaaatttgatcatcaaatgggtca |
206 |
Q |
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||||||||||||||| | ||||||| || | |||||| |||||| |||||||||| |||| |||||||||||||| ||||| | |||||||||| | |
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| T |
36472825 |
aagaatcttctcttggagagattcttcgaagccatggccttccaactggtctctttcctcagagtgtgaaatcatttaaattgg---atcaaatgggacg |
36472921 |
T |
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| Q |
207 |
tttagaggtaca |
218 |
Q |
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|||||||||||| |
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| T |
36472922 |
tttagaggtaca |
36472933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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