View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2138_low_56 (Length: 236)

Name: NF2138_low_56
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2138_low_56
NF2138_low_56
[»] chr3 (2 HSPs)
chr3 (64-221)||(9172194-9172347)
chr3 (1-93)||(9173648-9173749)
[»] chr6 (2 HSPs)
chr6 (1-98)||(28844830-28844927)
chr6 (44-96)||(18101442-18101494)
[»] chr1 (2 HSPs)
chr1 (1-53)||(29406841-29406893)
chr1 (23-72)||(45517340-45517389)
[»] chr7 (2 HSPs)
chr7 (1-53)||(31238889-31238941)
chr7 (44-98)||(31238941-31238995)
[»] chr5 (1 HSPs)
chr5 (1-53)||(34607123-34607175)
[»] chr4 (3 HSPs)
chr4 (44-96)||(1994791-1994843)
chr4 (19-71)||(30164152-30164205)
chr4 (44-80)||(1995523-1995559)
[»] chr8 (2 HSPs)
chr8 (44-98)||(1283317-1283371)
chr8 (44-98)||(8744260-8744314)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 9172347 - 9172194
Alignment:
Q  64 cattctcatagtatatgctctctacatatatatattcctaattttacaaaccaaaattaagcactttactaaaacatgacaagacattgacaataaaaat 163  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9172347 cattctcatagtatatgttct----atatatatattcctaattttacaaaccaaaattaagcactttactaaaacatgacaagacattgacaataaaaat 9172252  T
Q  164 ttatttatacaatcaaactatttaatctatttcctgaatcacttcaagatgcaaattc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9172251 ttatttatacaatcaaactatttaatctatttcctgaatcacttcaagatgcaaattc 9172194  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 9173648 - 9173749
Alignment:
Q  1 atgttttaatctcatctctttattttaatctgatggctgtaatt---------cattctcatataagaatgtcattctcatagtatatgctctctacata 91  Q
    ||||||||||||| || |||||||||||| |||||| |||||||         ||||||||| |||||||||||||||||||||||||| ||| || |||    
T  9173648 atgttttaatctcgtccctttattttaatttgatggatgtaattcattctcaccattctcatgtaagaatgtcattctcatagtatatgttctatatata 9173747  T
Q  92 ta 93  Q
    ||    
T  9173748 ta 9173749  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28844830 - 28844927
Alignment:
Q  1 atgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaatgtcattctcatagtatatgctctctacatatatatat 98  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  ||||| ||||||||||    
T  28844830 atgttttaatctcaaccctttattttaatctgatggctgtaattcattctcatataagaatgtcattctcatatgatatgtcctctatatatatatat 28844927  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 18101442 - 18101494
Alignment:
Q  44 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatat 96  Q
    ||||||||||||||  ||||||||||||||  ||||| |||||| ||||||||    
T  18101442 tcattctcatataaagatgtcattctcataagatatgttctctatatatatat 18101494  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29406893 - 29406841
Alignment:
Q  1 atgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 53  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29406893 atgttttaatctcatccctttattttaatctgatggctgtaattcattctcat 29406841  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 45517389 - 45517340
Alignment:
Q  23 ttttaatctgatggctgtaattcattctcatataagaatgtcattctcat 72  Q
    ||||||| |||||||| | |||||||||||||||| |||| |||||||||    
T  45517389 ttttaatttgatggctcttattcattctcatataaaaatgacattctcat 45517340  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31238889 - 31238941
Alignment:
Q  1 atgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 53  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  31238889 atgttttaatctcatccctttattttaatctgatggttgtaattcattctcat 31238941  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 31238941 - 31238995
Alignment:
Q  44 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatatat 98  Q
    ||||||||||||||||||||||||||||||  ||||| | | || ||||||||||    
T  31238941 tcattctcatataagaatgtcattctcatatgatatgttatatatatatatatat 31238995  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34607175 - 34607123
Alignment:
Q  1 atgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 53  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  34607175 atgttttaatctcatccctttattttaatttgatggctgtaattcattctcat 34607123  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 1994843 - 1994791
Alignment:
Q  44 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatat 96  Q
    |||||||||||||| |||| |||||||||||||||||  ||||| ||||||||    
T  1994843 tcattctcatataaaaatggcattctcatagtatatgtcctctatatatatat 1994791  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 30164152 - 30164205
Alignment:
Q  19 tttattttaatct-gatggctgtaattcattctcatataagaatgtcattctca 71  Q
    |||||||| |||| ||||||||  ||||||||||||||||| ||||||||||||    
T  30164152 tttattttgatcttgatggctgagattcattctcatataagtatgtcattctca 30164205  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 1995523 - 1995559
Alignment:
Q  44 tcattctcatataagaatgtcattctcatagtatatg 80  Q
    |||||||||||||| |||| |||||||||||||||||    
T  1995523 tcattctcatataaaaatgacattctcatagtatatg 1995559  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 1283371 - 1283317
Alignment:
Q  44 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatatat 98  Q
    |||||||||||||| |  ||||||||||||||||||| |||||| ||||| ||||    
T  1283371 tcattctcatataaaatagtcattctcatagtatatgttctctatatatagatat 1283317  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 8744260 - 8744314
Alignment:
Q  44 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatatat 98  Q
    |||||||||||||||||||||||||||| |  |||||| || || ||||||||||    
T  8744260 tcattctcatataagaatgtcattctcacatgatatgccctatatatatatatat 8744314  T

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