View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_60 (Length: 229)
Name: NF2138_low_60
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 9173427 - 9173660
Alignment:
| Q |
1 |
agaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaatt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||| ||||||| |
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| T |
9173427 |
agaacttcttgtagagaataatacacttcattctaatccagaattgaagatgcacctgaatttagagaagcatggtagagaagtttatcctcgtgaaatt |
9173526 |
T |
|
| Q |
101 |
ttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggggcttataattcat------gtgtaagtgcatgtgtgaatggaaaatgagaat |
194 |
Q |
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| T |
9173527 |
ttttatatattttagaaggagttgtggagtgcatgtgtagattgtggggcttataattcatgtgtgagtgtgagtgtatgcgtgaatggaaaatgagaat |
9173626 |
T |
|
| Q |
195 |
ggcacatgactaacttaaatgatgttttaatctc |
228 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
9173627 |
ggcacatgactaacttaagtgatgttttaatctc |
9173660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 9172430 - 9172378
Alignment:
| Q |
177 |
tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctca |
229 |
Q |
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| T |
9172430 |
tgaatgggaaatggaaatggcacatgactaacttaagtgatgttttaatctca |
9172378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 2203622 - 2203768
Alignment:
| Q |
1 |
agaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaatt |
100 |
Q |
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| T |
2203622 |
agaactttttgctgataataatacacttcattctaatccagaattgaatatgcacatgaatttagagaagcacgctagagaggtttatactcatgaaaac |
2203721 |
T |
|
| Q |
101 |
ttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg |
147 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
2203722 |
ttttacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg |
2203768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 15897403 - 15897257
Alignment:
| Q |
1 |
agaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaatt |
100 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||||| | |||||||||||||| ||||||||||||| || ||||||||||||||| |||| |||| |
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| T |
15897403 |
agaactttttgctgataataatacacttcattctaatccataattgaagatgcacatgaatttagagaagcacgctagagaggtttatactcacgaaaac |
15897304 |
T |
|
| Q |
101 |
ttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg |
147 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
15897303 |
ttttacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg |
15897257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 8578664 - 8578624
Alignment:
| Q |
185 |
aaatgagaatggcacatgactaacttaaatgatgttttaat |
225 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||||||||| |
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| T |
8578664 |
aaatgagaatgacacatgactaacttaagttatgttttaat |
8578624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 31238850 - 31238902
Alignment:
| Q |
177 |
tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctca |
229 |
Q |
| |
|
||||||| | |||| ||| |||||||||| |||||| |||||||||||||||| |
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|
| T |
31238850 |
tgaatggcacatgacaatagcacatgactcacttaagtgatgttttaatctca |
31238902 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 18860745 - 18860875
Alignment:
| Q |
17 |
aataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaattttttatatatttcaga |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||| ||||| |||||||| | |
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| T |
18860745 |
aataatacacttcattctaatccagaattgaagatgcacatgaatttagagaaccacgctagagaggtttatactcacgaaaacttttacatatttcaaa |
18860844 |
T |
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| Q |
117 |
aggagttgtggagtgcatgtgtagattgtgg |
147 |
Q |
| |
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|| |||||||||||||||||||||||||||| |
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| T |
18860845 |
agaagttgtggagtgcatgtgtagattgtgg |
18860875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 24319794 - 24319922
Alignment:
| Q |
1 |
agaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaatt |
100 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||| |||| |||| |
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| T |
24319794 |
agaactttttgctgataataatacacttcattctaatccagaattgaagatgcacatgaatttagagaagcacgctagagaggtttatactcacgaaaaa |
24319893 |
T |
|
| Q |
101 |
ttttatatatttcagaaggagttgtggag |
129 |
Q |
| |
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||||| |||||||| |||||||||||||| |
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| T |
24319894 |
ttttacatatttcaaaaggagttgtggag |
24319922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12298128 - 12298013
Alignment:
| Q |
1 |
agaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatgaaatt |
100 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| || || ||||||||||||| || |||||||||| |||| ||||||| ||||| ||||||||| | |
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| T |
12298128 |
agaacttctggcagataatgctacacttcattctattccagcattgaagatgcacgtggatttagagaagcatggtagagagatttatactcatgaaaat |
12298029 |
T |
|
| Q |
101 |
ttttatatatttcaga |
116 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
12298028 |
ttttacatatttcaga |
12298013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 28654296 - 28654247
Alignment:
| Q |
99 |
ttttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggg |
148 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
28654296 |
ttttttaaatattttggagggagttgtggagtgcatgtgtagattgtggg |
28654247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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