View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_61 (Length: 227)
Name: NF2138_low_61
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_61 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 13149146 - 13148926
Alignment:
| Q |
7 |
ggagatacaattgattacatgaaagagcttctagaaaggattagtaagttacaagaagaaatggagaaagaaggaacaaatcagataaaccttttaggaa |
106 |
Q |
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| T |
13149146 |
ggagatacaattgattacatgaaagagcttctagaaaggattagtaagttacaagaagaaatagagaaagaaggaacaaatcagataaaccttttaggaa |
13149047 |
T |
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| Q |
107 |
tttctaaggagttaaagccaaatgaagtaatggtaagaaattcccctaaggtatggtttagttccttgaacaagtaatgcataatcatagaccaagttca |
206 |
Q |
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| T |
13149046 |
tttctaaggagttaaagccaaatgaagtaatggtaagaaattcccctaaggtatggtttagttccttgaacaagtaatgcataatcatagaccaagttca |
13148947 |
T |
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| Q |
207 |
tgaataaatgtaattaatgta |
227 |
Q |
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| T |
13148946 |
tgaataaatgtaattaatgta |
13148926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 29009783 - 29009990
Alignment:
| Q |
7 |
ggagatacaattgattacatgaaagagcttctagaaaggattagtaagttacaagaagaaatggagaaagaaggaacaaatcagataaaccttttaggaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |
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| T |
29009783 |
ggagatacaattgattacatgaaagagcttctagaaaggattagtaagttacaagaagaaatggaggaataaggaacaaatcagataaacattttaggaa |
29009882 |
T |
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| Q |
107 |
tttctaaggagttaaagccaaatgaagtaatggtaagaaa-ttcccctaaggtatggtttagttccttgaacaagtaatgcataatcatagaccaagttc |
205 |
Q |
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| T |
29009883 |
tttctaaggagttaaagccaaatgaagtaatggtaagaaatttccccta--------------tccttgaacaactaatgcataatcatagaccaagttc |
29009968 |
T |
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| Q |
206 |
atgaataaatgtaattaatgta |
227 |
Q |
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| T |
29009969 |
atgaataaatgtaatcaatgta |
29009990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 52002906 - 52002872
Alignment:
| Q |
7 |
ggagatacaattgattacatgaaagagcttctaga |
41 |
Q |
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| T |
52002906 |
ggagatactattgattacatgaaagagcttctaga |
52002872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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