View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_64 (Length: 214)
Name: NF2138_low_64
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_64 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 12153604 - 12153405
Alignment:
| Q |
16 |
atgaaaattgacaaaaggaccaaatctaaaacattcgaaatctacaaaatcttcatcttggtcttctccctcctttcatcttaatcttcatctcatgcct |
115 |
Q |
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| T |
12153604 |
atgaaaattgacaaaaggaccaaatctaaaacattcgaaatctacaaaatcttcatcttcgtcttctctctcctttcatcttaatcttcatctcatgcct |
12153505 |
T |
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| Q |
116 |
tccactattcttc-taccaatatccaccaatttttctaaacatgtcttcatcattagtttctaactccgctccaacaaaattcttagctttcaatttaga |
214 |
Q |
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| T |
12153504 |
tccactattcttcttaccaatatccaccaatttttctaaacatgtcttcatcattagtttctaactccgctccaacaaaattcttagctttcaatttaga |
12153405 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 2317880 - 2317725
Alignment:
| Q |
52 |
gaaatctacaaaatcttcatcttggtcttctccctcctttcatcttaatcttcatctcatgccttccactattcttctaccaatatccaccaatttttct |
151 |
Q |
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|||||| ||||||||||| |||| |||||| || ||| |||||| |||||||||||| |||||| ||||||||||| | |||| || | || |||| |
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| T |
2317880 |
gaaatcgacaaaatcttcgtctt---cttctctcttcttccatcttcatcttcatctcacaccttcctctattcttctatccatat-cattatttattct |
2317785 |
T |
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| Q |
152 |
aaacatgtcttcatcattagtttctaactccgctccaacaaaattcttagctttcaattt |
211 |
Q |
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| T |
2317784 |
aaccatgtcttcatcatccattgctaactccactccaggaaaattcctttctttcaattt |
2317725 |
T |
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