View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2138_low_9 (Length: 447)
Name: NF2138_low_9
Description: NF2138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2138_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 2570680 - 2571103
Alignment:
| Q |
13 |
catcaccaacagaaataggagcatccagaagataatcatcctgcagcattggaaacaaagtatcaagaggtaaagctgataaatacaagccattaacact |
112 |
Q |
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| T |
2570680 |
catcaccaacagaaataggagcatccagaagataatcatcctgcagcattggaaacaaagtatcaagaggtaaagctgataaatacaagccattaacact |
2570779 |
T |
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| Q |
113 |
aagacacaaactttgtctccatttgaagtactacagttcagcttcagtgtcttccttgaagggaaacgctttgtggaacaagattgaaggtgagaatgga |
212 |
Q |
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| T |
2570780 |
aagacacaaactttgtctccatttgaagtactacagttcagcttcagtgtcttccttgaagggaaacgctttgtggaacaagattgaaggtgagaatgga |
2570879 |
T |
|
| Q |
213 |
agtaacaagaagaagaagcatgaaaagcttgaatggtcattgcatgaaagaagaagcagtggttggatagtgaagagggaaa-----aaagtagcttaag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2570880 |
agtaacaagaagaagaagcatgaaaagcttgaatggtcattgcatgaaagaagaagcagtggttggatagtgaagagggaaaaaagtaaagtagcttaag |
2570979 |
T |
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| Q |
308 |
agctaacagaacagaaaaaccgttagttagtacttttgatgccaacttaggaaggaaaagaaacatatgatgttttttgtccatttggaatggataggga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2570980 |
agctaacagaacagaaaaaccgttagttagtacttttgatgccaacttaggaaggaaaagaaacatatgatgttttttgtccatttggaatggataggga |
2571079 |
T |
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| Q |
408 |
ttctctggtctcaaaattgcttac |
431 |
Q |
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| T |
2571080 |
ttctctggtctcaaaattgcttac |
2571103 |
T |
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