View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21390_high_11 (Length: 378)
Name: NF21390_high_11
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 87 - 357
Target Start/End: Complemental strand, 39700580 - 39700310
Alignment:
| Q |
87 |
tgcatattaattattggacaatggagatacgacgactaaagatatttgataaacaaaccacatttagactcgccaaaaagagaaaaaattatgnnnnnnn |
186 |
Q |
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|||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||| |||||||||||| |||| | | |
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| T |
39700580 |
tgcatattaattattgaacaatggagatacgacaagtaaagatatttgataaacaaaccacatgtagattcgccaaaaagataaaattctgttttttttt |
39700481 |
T |
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| Q |
187 |
nnaacagcataaaaaattatttgatgtgacattctaattaatgacttgaattttcttccttcactactcatgagatgtaagtttgatggaggattagttg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39700480 |
ataacagcataaaaaattatttgatgtgacattctaatgaatgacttgaattttcttccttcaccactcatgagatgtaagtttgatggaggattagttg |
39700381 |
T |
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| Q |
287 |
gggcctataatgttgccaatgacttatgccattcatgatatgtgatcctctctggttcatgtccttggtga |
357 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
39700380 |
gggcctataatgttgccaatgacttatgccattcatggtatgtgatcctctctggttcaagtcgttggtga |
39700310 |
T |
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