View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21390_high_2 (Length: 728)
Name: NF21390_high_2
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_high_2 |
 | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 703; Significance: 0; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 10 - 712
Target Start/End: Complemental strand, 27589924 - 27589222
Alignment:
| Q |
10 |
tcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27589924 |
tcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatc |
27589825 |
T |
|
| Q |
110 |
aaatgaatatctcaatgcttcattatcacaaaagaaacggaaacgaaataaattttcaatccgtataaatcttcagaaaaagatttgggtgcatcctaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27589824 |
aaatgaatatctcaatgcttcattatcacaaaagaaacggaaacgaaataaattttcaatccgtataaatcttcagaaaaagatttgggtgcatcctaaa |
27589725 |
T |
|
| Q |
210 |
ttcagggctagattcagaaaacaaaaggagcaccggacctagattctctcaattaatcacaggtttgtggttttctgtttaaacttttgcattgttgcag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27589724 |
ttcagggctagattcagaaaacaaaaggagcaccggacctagattctctcaattaatcacaggtttgtggttttctgtttaaacttttgcattgttgcag |
27589625 |
T |
|
| Q |
310 |
tctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctcattgaagcatgtctggtgcccaacaagtgtttgtgttcgacaca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27589624 |
tctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctcattgaagcatgtctggtgcccaacaagtgtttgtgttcgacaca |
27589525 |
T |
|
| Q |
410 |
tgcgattacatgtaagtgtcgagtccggtgtcatgcttcatagggaggatggtttttcatatggttcataatgtcgaattttgaaaccactgaattttta |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27589524 |
tgcgattacatgtaagtgtcgagtccggtgtcatgcttcatagggaggatggtttttcatatggttcataatgtcgaattttgaaaccactgaattttta |
27589425 |
T |
|
| Q |
510 |
aacatagtttgcaagtgctgtagttcaattaatagactgtcatattgtaactttgatgtgaagtataacgtgattacaattgaaacattacttaataaca |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27589424 |
aacatagtttgcaagtgctgtagttcaattaatagactgtcatattgtaactttgatgtgaagtataacgtgattacaattgaaacattacttaataaca |
27589325 |
T |
|
| Q |
610 |
catgaggtttacattgagctaaatgcttgaatataaaacattttgtcgggtaatcaacgtgagtcttttctattgcagcataactgtatattgtgttact |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27589324 |
catgaggtttacattgagctaaatgcttgaatataaaacattttgtcgggtaatcaacgtgagtcttttctattgcagcataactgtatattgtgttact |
27589225 |
T |
|
| Q |
710 |
tat |
712 |
Q |
| |
|
||| |
|
|
| T |
27589224 |
tat |
27589222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 27674348 - 27674067
Alignment:
| Q |
10 |
tcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27674348 |
tcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcgatccttatattagaaagacaaaatc |
27674249 |
T |
|
| Q |
110 |
aaatgaatatctcaatgcttcattatcacaaaagaaacggaaacgaaataaattttcaatccgtataaatcttcagaaaaagatttgggtgcatcctaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27674248 |
aaatgaatatctcaatgcttcattgtcacaaaagaaacggaaacgaaataaattttcaatccgtataaatcttcagaaaaagatttgggtgcatcctaaa |
27674149 |
T |
|
| Q |
210 |
ttcagggctagattcagaaaacaaaaggagcaccggacctagattctctcaattaatcacaggtttgtggttttctgtttaaacttt |
296 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27674148 |
ttcagggctagattcagaaaacaaaaagagcacca-----agattctctcaattaatcacaggtttgtggttttctgtttaaacttt |
27674067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 296 - 559
Target Start/End: Complemental strand, 27673624 - 27673361
Alignment:
| Q |
296 |
ttgcattgttgcagtctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctcattgaagcatgtctggtgcccaacaagtgt |
395 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27673624 |
ttgcatttgtgcggtctaaaatattgtttgaatttaatatgcaggatgttttgtagcacaaacaattctcatagaagcatgtctggtgcccaacaagtgt |
27673525 |
T |
|
| Q |
396 |
ttgtgttcgacacatgcgattacatgtaagtgtcgagtccggtgtcatgcttcatagggaggatggtttttcatatggttcataatgtcgaattttgaaa |
495 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27673524 |
ttgtgttcgacacatgcaattacatgtaagtgtcgagtccggtgtcatgcttgatagggaggatggtttttcatatggttcataatgtcgaattttgaaa |
27673425 |
T |
|
| Q |
496 |
ccactgaatttttaaacatagtttgcaagtgctgtagttcaattaatagactgtcatattgtaa |
559 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27673424 |
ccactgaatttttaatcatagtttgcaagtgctgtagttcaattaatagactgtcatattgtaa |
27673361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 26805936 - 26806180
Alignment:
| Q |
21 |
caaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaatatc |
120 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26805936 |
caaatcggaatccacgtgttaatggagaaaagcaacacggaggag---aatgtggtattcaccaatccttatattagaaagacaaaatcagatgaatatc |
26806032 |
T |
|
| Q |
121 |
tcaatgcttcat------tatcacaaaagaaacggaaacgaaataaattttcaatccgtataaatcttcagaaaaagatttgggtgcatcctaaattcag |
214 |
Q |
| |
|
| |||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||||||||| || |||||||||||||| || ||||||||| |
|
|
| T |
26806033 |
ttaatgcttcattatcattatcacaagagaaaatgaaacgaaagaaattttcaatccgtataaatcttcggagaaagatttgggtgcttcttaaattcag |
26806132 |
T |
|
| Q |
215 |
ggctagattcagaaaacaaaaggagcaccggacctagattctctcaat |
262 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
26806133 |
ggctaggttcagaaaacaaaaagagcaccggagctagattctctcaat |
26806180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 305 - 470
Target Start/End: Original strand, 26806245 - 26806426
Alignment:
| Q |
305 |
tgcagtctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctcattgaagcatgtctggtgcccaacaagtgtttgtgtt-- |
402 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||||||| || |
|
|
| T |
26806245 |
tgcagtctagaatattgtttgaatttaatgttgaggatgttttgtagcacaaacacttcccgttgaagcatgtctggtgcccaacatgtgtttgttttca |
26806344 |
T |
|
| Q |
403 |
--------------cgacacatgcgattacatgtaagtgtcgagtccggtgtcatgcttcatagggaggatggtttttcata |
470 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26806345 |
acactaacacgcaccaacacatgcgattacatgtaagtgtcaagtccggtgtcgtgcttcatagggaggatggtttttcata |
26806426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 27682318 - 27682427
Alignment:
| Q |
16 |
atgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatga |
115 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||| |||| |
|
|
| T |
27682318 |
atgcacaaaggggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattcacagatccttgtattacaaagacaaaatcagatga |
27682417 |
T |
|
| Q |
116 |
atatctcaat |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
27682418 |
atatctcaat |
27682427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 27607889 - 27607770
Alignment:
| Q |
21 |
caaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaatatc |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| | |||||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
27607889 |
caaatgggaatccacgtgtggaatgagaaaagcaacacagaggagaagaatgtggtattcactgatccttatattagaaagagaaaatcagatgaacatc |
27607790 |
T |
|
| Q |
121 |
tcaatgcttcattatcacaa |
140 |
Q |
| |
|
||||||||| |||| |||| |
|
|
| T |
27607789 |
gcaatgcttcgttattacaa |
27607770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 27695375 - 27695312
Alignment:
| Q |
16 |
atgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatt |
79 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27695375 |
atgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtatt |
27695312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 26638814 - 26638934
Alignment:
| Q |
17 |
tgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaa |
116 |
Q |
| |
|
||||| ||||||||||||||| | || ||||||||||||||||||||||| |||| |||| | ||||||||||| |||||||| ||||| | ||||| |
|
|
| T |
26638814 |
tgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggagga---tgtgatattcaccaatccttataatagaaagagaaaattagatgaa |
26638910 |
T |
|
| Q |
117 |
tatctcaatgcttcattatcacaa |
140 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
26638911 |
tatctgaatgcttcattatcacaa |
26638934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 26744780 - 26744900
Alignment:
| Q |
17 |
tgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaa |
116 |
Q |
| |
|
||||| ||||||||||||||| | || ||||||||||||||||||||||| |||| |||| | ||||||||||| |||||||| ||||| | ||||| |
|
|
| T |
26744780 |
tgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggagga---tgtgatattcaccaatccttataatagaaagagaaaattagatgaa |
26744876 |
T |
|
| Q |
117 |
tatctcaatgcttcattatcacaa |
140 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
26744877 |
tatctgaatgcttcattatcacaa |
26744900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 27715305 - 27715245
Alignment:
| Q |
19 |
cacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatt |
79 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27715305 |
cacaaatgggagtccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtatt |
27715245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 27657494 - 27657384
Alignment:
| Q |
19 |
cacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaata |
118 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| ||| |||||| |||||||||| | |||||||||||||||||| ||||| | | |||| |
|
|
| T |
27657494 |
cacaaatgggaatccacgtgttgaagaagaaaagcaacatggatgaggaggatgtggtattcactgatccttatattagaaagataaaattagaaaaata |
27657395 |
T |
|
| Q |
119 |
tctcaatgctt |
129 |
Q |
| |
|
||||||||||| |
|
|
| T |
27657394 |
tctcaatgctt |
27657384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 27703643 - 27703571
Alignment:
| Q |
52 |
gcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaatatctcaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||| | ||||||||||||| |
|
|
| T |
27703643 |
gcaacacggaggaggagaatgtggtattcatcgatccttatattcgaaagatgaaattagatgaatatctcaa |
27703571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 26888143 - 26888244
Alignment:
| Q |
63 |
gaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaatatctcaatgcttcattatcacaaaagaaacggaaacgaaataaat |
162 |
Q |
| |
|
|||||||||||| |||| | |||||| |||| || || |||||||| |||||||||||||| ||||||||||| |||| ||| |||||||||| |||| |
|
|
| T |
26888143 |
gaggagaatgtgatattcaccaatccatata---gagagtcaaaatcagatgaatatctcaatacttcattatcagaaaataaaaggaaacgaaagaaat |
26888239 |
T |
|
| Q |
163 |
tttca |
167 |
Q |
| |
|
||||| |
|
|
| T |
26888240 |
tttca |
26888244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 25583077 - 25583130
Alignment:
| Q |
10 |
tcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggagg |
63 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25583077 |
tcagaaatacgcaaatgggaatccacgtgtggaaggagaaaagcaacacggagg |
25583130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 27424095 - 27424010
Alignment:
| Q |
117 |
tatctcaatgcttcattatcacaaaagaaacggaaacgaaataaattttcaatccgtataaatcttcagaaaaagatttgggtgca |
202 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||| ||| ||||||||||||| ||| || |||||| |||||| |||||||| |
|
|
| T |
27424095 |
tatctcaatgcatcattatcagaaaagaaaaggaaacaaaacaaattttcaatccttatggattttcagagaaagatgtgggtgca |
27424010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 25514246 - 25514288
Alignment:
| Q |
21 |
caaatgggaatccacgtgtggaaagagaaaagcaacacggagg |
63 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25514246 |
caaatgggaatccacgtgtggaaggagaaaagcaacacggagg |
25514288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 26059298 - 26059351
Alignment:
| Q |
10 |
tcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggagg |
63 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
26059298 |
tcagaaatacgcaaatgggaatccacgtgtggaaggagaaaagcaacatggagg |
26059351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 26079268 - 26079321
Alignment:
| Q |
10 |
tcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggagg |
63 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
26079268 |
tcagaaatacgcaaatgggaatccacgtgtggaaggagaaaagcaacatggagg |
26079321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 712
Target Start/End: Original strand, 26806924 - 26806987
Alignment:
| Q |
649 |
attttgtcgggtaatcaacgtgagtcttttctattgcagcataactgtatattgtgttacttat |
712 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
26806924 |
attttgtcgggtaatcaatgtgggttgtttctattcaagcataaatgtatattgtgttacttat |
26806987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 25486757 - 25486799
Alignment:
| Q |
21 |
caaatgggaatccacgtgtggaaagagaaaagcaacacggagg |
63 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25486757 |
caaatcggaatccacgtgtggaaggagaaaagcaacacggagg |
25486799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 31287988 - 31288050
Alignment:
| Q |
17 |
tgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatt |
79 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |||| | ||||||||||||||| |||| |
|
|
| T |
31287988 |
tgcacaaatgggaatccacgtgttaaaggagaaaaacaacgcagaggaggagaatgtgatatt |
31288050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 25548347 - 25548400
Alignment:
| Q |
10 |
tcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggagg |
63 |
Q |
| |
|
|||||||| | |||||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
25548347 |
tcagaaatacgcaaatgggaatccatgtgtggaaggagaaaagcaacatggagg |
25548400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 26888967 - 26889027
Alignment:
| Q |
305 |
tgcagtctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctc |
365 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| | |||| ||||||||||| ||| ||||| |
|
|
| T |
26888967 |
tgcagtctaaaatattgtttcaatttactgtggaagatgctttgtagcacatacacttctc |
26889027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 712
Target Start/End: Complemental strand, 27419794 - 27419755
Alignment:
| Q |
673 |
tcttttctattgcagcataactgtatattgtgttacttat |
712 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27419794 |
tcttctctgttgcagcataactgtatattgtgttacttat |
27419755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 26626533 - 26626583
Alignment:
| Q |
17 |
tgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggagga |
67 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||||||||||||| || ||||| |
|
|
| T |
26626533 |
tgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgagga |
26626583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 26732510 - 26732560
Alignment:
| Q |
17 |
tgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggagga |
67 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||||||||||||| || ||||| |
|
|
| T |
26732510 |
tgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgagga |
26732560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 712
Target Start/End: Complemental strand, 27507266 - 27507236
Alignment:
| Q |
682 |
ttgcagcataactgtatattgtgttacttat |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27507266 |
ttgcagcataactgtatattgtgttacttat |
27507236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 712
Target Start/End: Original strand, 31288403 - 31288437
Alignment:
| Q |
678 |
tctattgcagcataactgtatattgtgttacttat |
712 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31288403 |
tctatagcagcataactgtatattgtgttacttat |
31288437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 265092 - 264819
Alignment:
| Q |
12 |
agaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattag-aaagacaaaatca |
110 |
Q |
| |
|
|||| |||||||||||||||||||| || | ||||||||||||| ||||||||| ||||| |||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
265092 |
agaagtgcacaaatgggaatccacgagttaatggagaaaagcaacagggaggaggataatgttatattcaccaatccttatattagtaaagacaaaatca |
264993 |
T |
|
| Q |
111 |
aatgaatatctcaatgcttcatt------atcacaaaagaaacggaaacgaaataaattttcaatccgtataaatcttcagaaaaagatttgggtgcatc |
204 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||||||||| |||||||||||| | ||||| || |
|
|
| T |
264992 |
aatgaatatctcaatgcttcattatcattatcagaaaagaaaatgaaacgaaagaaattttcaatccttataaatcttcaaagaaagactt--------- |
264902 |
T |
|
| Q |
205 |
ctaaattcagggctagattcagaaaacaaaaggagcaccggacctagattctctcaattaatcacaggtttgtggttttctgtttaaacttt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
264901 |
---------gggctagattcagaaaacaaaaggagcaccggagctagattctctcaattaatcgcaggtttgtggtttcctttttaaacttt |
264819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 264773 - 264669
Alignment:
| Q |
305 |
tgcagtctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctcattga-agcatgtctggtgcccaacaagtgtttgtgttc |
403 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| || || |||| ||||||||||| ||||||||||| |
|
|
| T |
264773 |
tgcagtctaaaatattgtttgaatataatgtggaggatgttttgtagcacaaacacttctcatagatggcgtgtcaggtgcccaacatatgtttgtgttc |
264674 |
T |
|
| Q |
404 |
gacac |
408 |
Q |
| |
|
||||| |
|
|
| T |
264673 |
gacac |
264669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 559
Target Start/End: Complemental strand, 264513 - 264469
Alignment:
| Q |
515 |
agtttgcaagtgctgtagttcaattaatagactgtcatattgtaa |
559 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
264513 |
agtttgcaagtgctttagttcaattagtagactgtcttattgtaa |
264469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 18652297 - 18652182
Alignment:
| Q |
22 |
aaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaatatct |
121 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||| | ||||| |||| |||| || |||||||||| |||||||| ||||| | |||||||||| |
|
|
| T |
18652297 |
aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgagga---tgtgatattcattaatccttatagtagaaagagaaaattagatgaatatct |
18652201 |
T |
|
| Q |
122 |
caatgcttcattatcacaa |
140 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18652200 |
caatgcttcattatcacaa |
18652182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 18686395 - 18686280
Alignment:
| Q |
22 |
aaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaatatct |
121 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| | ||||| |||| |||| | |||| |||||| |||||||| ||||| | |||||||||| |
|
|
| T |
18686395 |
aaatgggaatccacgtgtggaaggagaaaaacaacacgaatgagga---tgtgatattcaccaattcttatagtagaaagagaaaattagatgaatatct |
18686299 |
T |
|
| Q |
122 |
caatgcttcattatcacaa |
140 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18686298 |
caatgcttcattatcacaa |
18686280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 18720885 - 18720770
Alignment:
| Q |
22 |
aaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaatatct |
121 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||| | ||||| |||| |||| | ||||||||||| |||||||| ||||| | |||||||||| |
|
|
| T |
18720885 |
aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgagga---tgtgatattcaccaatccttatagtagaaagagaaaattagatgaatatct |
18720789 |
T |
|
| Q |
122 |
caatgcttcattatcacaa |
140 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18720788 |
caatgcttcattatcacaa |
18720770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 18676365 - 18676240
Alignment:
| Q |
12 |
agaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaa |
111 |
Q |
| |
|
|||| |||| ||||||||||||||||||| || ||||||| ||||||| | ||||| |||| |||| | ||||||||||| |||||||| |||| | |
|
|
| T |
18676365 |
agaagtgcaaaaatgggaatccacgtgtgcaaggagaaaaacaacacgaatgagga---tgtgatattcaccaatccttatagtagaaagagaaaaatag |
18676269 |
T |
|
| Q |
112 |
atgaatatctcaatgcttcattatcacaa |
140 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18676268 |
atgaatatctcaatgcttcattatcacaa |
18676240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 18696201 - 18696086
Alignment:
| Q |
22 |
aaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaatatct |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| | ||||| |||| |||| | ||||||||||| |||||||| | ||| | |||||||||| |
|
|
| T |
18696201 |
aaatgggaatccacgtgtggaaggagaaaagtaacataaatgagga---tgtgatattcaccaatccttatagtagaaagagagaattagatgaatatct |
18696105 |
T |
|
| Q |
122 |
caatgcttcattatcacaa |
140 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18696104 |
caatgcttcattatcacaa |
18696086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 18728321 - 18728206
Alignment:
| Q |
22 |
aaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatttatcaatccttatattagaaagacaaaatcaaatgaatatct |
121 |
Q |
| |
|
||||||||||||||||| | || ||||||| ||||||| | ||||| |||| |||| | ||||||||||| |||| ||| ||||| | |||||||||| |
|
|
| T |
18728321 |
aaatgggaatccacgtgcgcaaggagaaaaacaacacgaatgagga---tgtgatattcaccaatccttatagtagatagagaaaattagatgaatatct |
18728225 |
T |
|
| Q |
122 |
caatgcttcattatcacaa |
140 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18728224 |
caatgcttcattatcacaa |
18728206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 16639 - 16699
Alignment:
| Q |
19 |
cacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatt |
79 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16639 |
cacaaatgggagtccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtatt |
16699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 29270609 - 29270551
Alignment:
| Q |
21 |
caaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatt |
79 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29270609 |
caaatgggaatccacgtgtggaatgagaaaagcaacacggatgaggagaatgtggtatt |
29270551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 63268 - 63353
Alignment:
| Q |
117 |
tatctcaatgcttcattatcacaaaagaaacggaaacgaaataaattttcaatccgtataaatcttcagaaaaagatttgggtgca |
202 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||| ||| ||||||||||||| ||| || |||||| |||||| |||||||| |
|
|
| T |
63268 |
tatctcaatgcatcattatcagaaaagaaaaggaaacaaaacaaattttcaatccttatggattttcagagaaagatgtgggtgca |
63353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 712
Target Start/End: Original strand, 67569 - 67608
Alignment:
| Q |
673 |
tcttttctattgcagcataactgtatattgtgttacttat |
712 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
67569 |
tcttctctgttgcagcataactgtatattgtgttacttat |
67608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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