View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21390_high_21 (Length: 264)

Name: NF21390_high_21
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21390_high_21
NF21390_high_21
[»] chr1 (2 HSPs)
chr1 (20-131)||(6261146-6261257)
chr1 (197-254)||(6261011-6261068)
[»] scaffold0316 (1 HSPs)
scaffold0316 (215-254)||(17244-17283)
[»] chr7 (2 HSPs)
chr7 (215-254)||(12311045-12311084)
chr7 (215-254)||(2318161-2318200)
[»] chr2 (1 HSPs)
chr2 (215-254)||(3440120-3440159)
[»] chr8 (1 HSPs)
chr8 (215-254)||(15258849-15258888)
[»] chr6 (1 HSPs)
chr6 (215-254)||(31110681-31110720)
[»] chr4 (1 HSPs)
chr4 (215-254)||(50052348-50052387)
[»] chr3 (4 HSPs)
chr3 (215-254)||(26754836-26754875)
chr3 (215-254)||(48375626-48375665)
chr3 (215-249)||(26141450-26141484)
chr3 (215-249)||(41189684-41189718)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 6261257 - 6261146
Alignment:
Q  20 ctgcatagaagagattttctagatatgtttatgagcatttttataagctctgtggcaatttctccggcgaagaaatcgttcagtgccatttttgaacact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6261257 ctgcatagaagagattttctagatatgtttatgagcatttttataagctctgtggcaatttctccggcgaagaaatcgttcagtgccatttttgaacact 6261158  T
Q  120 tcttaactacta 131  Q
    ||||||||||||    
T  6261157 tcttaactacta 6261146  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 6261068 - 6261011
Alignment:
Q  197 ggactatattgcccttgcaaaatgttacatagaccccctttatttccatacacctttg 254  Q
    ||||||||||||||||| ||||||||||||| || || ||||||| ||||||||||||    
T  6261068 ggactatattgcccttggaaaatgttacatacacaccatttattttcatacacctttg 6261011  T

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Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 17283 - 17244
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacacctttg 254  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  17283 aaaatgttacatagacaccctttatttccatacacctttg 17244  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 12311084 - 12311045
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacacctttg 254  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  12311084 aaaatgttacatagacaccctttatttccatacacctttg 12311045  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 2318161 - 2318200
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacacctttg 254  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  2318161 aaaatgttacatagacacactttatttccatacacctttg 2318200  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 3440159 - 3440120
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacacctttg 254  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  3440159 aaaatgttacatagacaccctttatttccatacacctttg 3440120  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 15258849 - 15258888
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacacctttg 254  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  15258849 aaaatgttacatagacaccctttatttccatacacttttg 15258888  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 31110681 - 31110720
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacacctttg 254  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  31110681 aaaatgttacatagacatcctttatttccatacacctttg 31110720  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 50052348 - 50052387
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacacctttg 254  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  50052348 aaaatgttacatagacaccctttattcccatacacctttg 50052387  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 26754875 - 26754836
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacacctttg 254  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  26754875 aaaatgttacatagacactctttatttccatacacctttg 26754836  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 48375626 - 48375665
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacacctttg 254  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  48375626 aaaatgttacatagacaccctttatttccatacatctttg 48375665  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 26141450 - 26141484
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacac 249  Q
    |||||||||||||||| ||||||||||||||||||    
T  26141450 aaaatgttacatagacaccctttatttccatacac 26141484  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 41189684 - 41189718
Alignment:
Q  215 aaaatgttacatagaccccctttatttccatacac 249  Q
    |||||||||||||||| ||||||||||||||||||    
T  41189684 aaaatgttacatagacaccctttatttccatacac 41189718  T

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