View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21390_high_26 (Length: 240)
Name: NF21390_high_26
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30315555 - 30315775
Alignment:
| Q |
1 |
caaaattaaattgaattgaatgtagcctatattagttannnnnnnnnnnnaatgacatgttaacattatttaaaatatttggttcttcttaattgaaggt |
100 |
Q |
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| T |
30315555 |
caaaattaaattaaattgaatgtagcctatattagttattttttatttttaatgacatgttaacattatttaaaatatttggttctacttaattgaaggt |
30315654 |
T |
|
| Q |
101 |
gaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagac |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30315655 |
gaggaagacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagac |
30315754 |
T |
|
| Q |
201 |
aatcttactttgcaaatgctc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
30315755 |
aatcttactttgcaaatgctc |
30315775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 30292147 - 30292275
Alignment:
| Q |
93 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaa |
192 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30292147 |
ttgaaggtgaggaggacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30292246 |
T |
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| Q |
193 |
tcagagacaatcttactttgcaaatgctc |
221 |
Q |
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| T |
30292247 |
tcagagacaatcttactttgcaaatgctc |
30292275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 30304781 - 30304909
Alignment:
| Q |
93 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaa |
192 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30304781 |
ttgaaggtgaggaggacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30304880 |
T |
|
| Q |
193 |
tcagagacaatcttactttgcaaatgctc |
221 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30304881 |
tcagagacaatcttactttgcaaatgctc |
30304909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 30299989 - 30300117
Alignment:
| Q |
93 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30299989 |
ttgaaggtgaggaagacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30300088 |
T |
|
| Q |
193 |
tcagagacaatcttactttgcaaatgctc |
221 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
30300089 |
tcagagacaatcttactttgcaaatgctc |
30300117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 30287113 - 30287241
Alignment:
| Q |
93 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaa |
192 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30287113 |
ttgaaggtgaggaggacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30287212 |
T |
|
| Q |
193 |
tcagagacaatcttactttgcaaatgctc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
30287213 |
tcagagacaatcttactttgcaaatgctc |
30287241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 30287018 - 30287064
Alignment:
| Q |
51 |
aatgacatgttaacattatttaaaatatttggttcttcttaattgaa |
97 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||| |||||||||| |
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|
| T |
30287018 |
aatgacatgttaacattaattaaaagatttgcttctacttaattgaa |
30287064 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 30292052 - 30292098
Alignment:
| Q |
51 |
aatgacatgttaacattatttaaaatatttggttcttcttaattgaa |
97 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||| |||||||||| |
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|
| T |
30292052 |
aatgacatgttaacattaattaaaagatttgcttctacttaattgaa |
30292098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 30304686 - 30304732
Alignment:
| Q |
51 |
aatgacatgttaacattatttaaaatatttggttcttcttaattgaa |
97 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||| |||||||||| |
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|
| T |
30304686 |
aatgacatgttaacattaattaaaagatttgcttctacttaattgaa |
30304732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 46810441 - 46810566
Alignment:
| Q |
96 |
aaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatca |
195 |
Q |
| |
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|||||||||| |||||||||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| |||| ||||| |||||| ||||||| || |
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| T |
46810441 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaacca |
46810540 |
T |
|
| Q |
196 |
gagacaatcttactttgcaaatgctc |
221 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
46810541 |
aagacaatcttactttgcaaatgctc |
46810566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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