View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21390_high_27 (Length: 238)
Name: NF21390_high_27
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_high_27 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 31181642 - 31181736
Alignment:
| Q |
145 |
atcaaacaaccttaaccttataaaatctct-gtctcaaacatccttattctctccgaacatatcaatggcaacaaaacaaccactctggtctcca |
238 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31181642 |
atcaaacaaccttaaccgtataaaatctcttgtctcaaacatccttattctctccgaacatgtcaatggcaacaaaacaaccactctggtctcca |
31181736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 31181507 - 31181566
Alignment:
| Q |
11 |
atcatcactgtcttaaacta-ctagcttcaaaccttaataaaagcagattgtcttcaaca |
69 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31181507 |
atcatcactgtcttaaactaactagcttcaaaccttaataaaagcagattgtcttcaaca |
31181566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University