View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21390_high_6 (Length: 450)
Name: NF21390_high_6
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_high_6 |
 | |
|
| [»] scaffold0459 (1 HSPs) |
| | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0459 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 5930 - 6083
Alignment:
| Q |
19 |
caacaaagagtgattgtaaaagattgctcactctttgctcatttactctaacaggcaagcatgcatcaatatgcttctcaggatcaaatgt-atct--tt |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||| ||||||||| |||||| |||||||||| ||| || |
|
|
| T |
5930 |
caacaaagagtgattgtaaaaggttgctcactctttgctcctttactcttacaggcaaatatgtatcaatatgtttctcaagatcaaatgtgctcttatt |
6029 |
T |
|
| Q |
116 |
gttttctcctttatcttcaccttttaggattaactcttttaaattctctagttc |
169 |
Q |
| |
|
||| ||||||||||||||||| ||||||| || ||||| |||| ||||||||| |
|
|
| T |
6030 |
gttgtctcctttatcttcaccatttaggacaaaatctttcaaatcctctagttc |
6083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 5930 - 6083
Alignment:
| Q |
19 |
caacaaagagtgattgtaaaagattgctcactctttgctcatttactctaacaggcaagcatgcatcaatatgcttctcaggatcaaatgt-atct--tt |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| | |||||| |||||||| ||| |||||| || |||||| |||||||||| ||| || |
|
|
| T |
5930 |
caacaaagagtgattgtaaaaggttgctcactctttgctcctatactcttacaggcaaatatgtatcaatgtgtttctcaagatcaaatgtgctcttatt |
6029 |
T |
|
| Q |
116 |
gttttctcctttatcttcaccttttaggattaactcttttaaattctctagttc |
169 |
Q |
| |
|
||| ||||||||||||||||| ||||||| || ||||| |||| ||||||||| |
|
|
| T |
6030 |
gttgtctcctttatcttcaccatttaggacaaaatctttcaaatcctctagttc |
6083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 38685296 - 38685334
Alignment:
| Q |
262 |
catgacactgacacatgtggttatattcaattacttcca |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38685296 |
catgacactgacacatgtggttacattcaattacttcca |
38685334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 10948766 - 10948799
Alignment:
| Q |
267 |
cactgacacatgtggttatattcaattacttcca |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
10948766 |
cactaacacatgtggttatattcaattacttcca |
10948799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 18814805 - 18814845
Alignment:
| Q |
255 |
acaccaacatgacactgacacatgtggttatattcaattac |
295 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
18814805 |
acaccaacacgacactaacacatgtggttatattcaattac |
18814845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 24105283 - 24105320
Alignment:
| Q |
257 |
accaacatgacactgacacatgtggttatattcaatta |
294 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
24105283 |
accaacatgacactgacacatttgattatattcaatta |
24105320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 2304055 - 2304092
Alignment:
| Q |
261 |
acatgacactgacacatgtggttatattcaattacttc |
298 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
2304055 |
acatgatactgacacatgtggttatgttcaattacttc |
2304092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University