View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21390_high_9 (Length: 428)
Name: NF21390_high_9
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 423
Target Start/End: Complemental strand, 37376096 - 37375711
Alignment:
| Q |
14 |
atatcaataatatcacacatactcatagtcacaaaattgttattcgtgaaattgttttcatgtacgttcttagtttgaaaactgaaaaggtaataaaatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37376096 |
atatcaataatatcacacatactcatagtcacaaaattgttat----------------atgtatgttcttagtctgaaaactgaaaaggtaataaaatg |
37376013 |
T |
|
| Q |
114 |
aattatcataaggtcaatattcctaagggtatacaaaaatattgaattgcagtttggtaaataaataaacaaataagttaattatacttcttatccattc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37376012 |
aattatcataaggtcaatattcctaagggtatacaaaaatattgaattgcagtttggtaaataaataaacaaataagttaattatacttcttatccattg |
37375913 |
T |
|
| Q |
214 |
tttgtaattgtaatgtacagatctgatctgacatgtgcttgaattccatgctgaagtttttgttagcagcaacacttcacgatttcacgttgccataaaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37375912 |
tttgtaattgtaatgtacagatctgatctaacacgtgcttgaattccatgctgaa--------tagcagcaacacttcacgatttcacgttgccttaaaa |
37375821 |
T |
|
| Q |
314 |
ccaatgggacacatatattcttgggcaaacacttcaagatatattgtcccattcatgttaacacgtgaaagtgtgcatcggatatttggaataatcatag |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37375820 |
ccaatgggacacatatattcttgggcaaacacttcaagagatattgtcccattcatgttaacacgtgaaagtgtgcatcggatatttggaataatcatag |
37375721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University