View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21390_low_1 (Length: 866)
Name: NF21390_low_1
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Complemental strand, 3574625 - 3574077
Alignment:
| Q |
18 |
atgaacctattaagtagagttaaaagataatactttttgtaataaaaattggaagattgataacaaccatattaaatgttacctcaatcactaaataatg |
117 |
Q |
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| T |
3574625 |
atgaacctattaagtagagttaaaagataatactttttgtaataaaaattggaagattgataacaaccatattaaatgttacctcaatcactaaataatg |
3574526 |
T |
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| Q |
118 |
gacctccccgccgaaattataaaaattaagaaagttggtaaccttgtcnnnnnnnnnnn-------gttggtaataataataattttgtaaacaattaat |
210 |
Q |
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| T |
3574525 |
gacctccc-gcggaaattataaaaattaagaaagttggtaaccttgtcaaaaaaaaaaaaaaaaaagttggtaataataataattttgtaaacaattaat |
3574427 |
T |
|
| Q |
211 |
ttgtattgttttccaagtttgttaatttaccttcaaatcatatatagtacttgttgttgataattgatgcattttaaaatttgaaatggttgatgctata |
310 |
Q |
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| T |
3574426 |
ttgtattgttttccaagtttgttaatttaccttcaaatcatatatagtacttgttgttgataattgatgcattttaaaatttgaaatggttgatcctata |
3574327 |
T |
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| Q |
311 |
aaaatagacnnnnnnnttctccagaaataaagatgaaggtattattgttactaaatttattgatcattgag-------tannnnnnnnataccaattctc |
403 |
Q |
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| T |
3574326 |
aaaatagacaaaaaaattctccagaaataaagatgaaggtattattgttactaaatttattgatcattgagtttttttttttttttttataccaattcgc |
3574227 |
T |
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| Q |
404 |
agatttataaacaaaagaaatacttgaaaatagttgcgaggacatgttcaaatataattctgaatcatttaaataatgttagcaatattatgattacttg |
503 |
Q |
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| T |
3574226 |
agatttataaacaaaagaaatacttgaaaatagttgcgaggacattttcaaatataattttgaatcatttaaataatgttagcaatatta--------tg |
3574135 |
T |
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| Q |
504 |
attacaaactcaacatttatttg--gaaaaacaaaaaccctacatttctttttctgtc |
559 |
Q |
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| T |
3574134 |
attacaaactcaacatttatttgaaaaaaaaaaaaaaccctacatttctttttctgtc |
3574077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 614 - 845
Target Start/End: Complemental strand, 3574030 - 3573798
Alignment:
| Q |
614 |
caagaaacagcaatagtaaaggacactccataagaattgaaaaatgaattatagacacatacctgttaactctcttttcccttg-aaagaaaaaagagac |
712 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
3574030 |
caagaaacagcaatagtaaaggacactccataagaattgaaaaatgaattatagacacatatctgttaactctcttttcccttggaaagaaaaaagagac |
3573931 |
T |
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| Q |
713 |
aaactaaacttgtagcacacaaaagagaagacccttttgtagaatgcaatgatgcaagcatgaataagcttaatgaacttataggatataccaaacatta |
812 |
Q |
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| T |
3573930 |
aaaataaacttgtagcacacaaaagagaagacccttttgtagaatgcaatgatgcaagcatgaataagtttaatgaacttataggatataccaaacatta |
3573831 |
T |
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| Q |
813 |
attatagtctacaacataagttggttttagagc |
845 |
Q |
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| T |
3573830 |
attatagtctacaacataagttggttctagagc |
3573798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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