View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21390_low_13 (Length: 365)
Name: NF21390_low_13
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 191 - 350
Target Start/End: Complemental strand, 16087434 - 16087279
Alignment:
| Q |
191 |
ttagagtatgagagtgtgcgattttgactttctaaaatcttgagtcattatgttggaacgtataatcatattataatgtaacgtgtaaagttctttgaac |
290 |
Q |
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| T |
16087434 |
ttagagtatgagagtgtgcgattttgactttctaaaatcttgagtcactatgttggaacatataatcatattataatgtg----gtaaagttctttgaac |
16087339 |
T |
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| Q |
291 |
cgagcgcctgactaatatgttaaacatgtttgctttttaaagctttgctggtttataggc |
350 |
Q |
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| T |
16087338 |
cgagcgcctgactaatatgttaaacatgtttgctttttaaagctttgctggtttataggc |
16087279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 16087555 - 16087433
Alignment:
| Q |
1 |
gagaactatgatagcatcttagaagttagaatactttaaacttaatcatcatgagctgaagtagtgattcatgtaatattgttttgagctattttcttat |
100 |
Q |
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| T |
16087555 |
gagaactatgatagcatcttagaagttagaatactttaaacttaatcatcatgagctgaagtagtgattcatgtaatattgttttgagctattttcttat |
16087456 |
T |
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| Q |
101 |
gtctttaatccttggtgcttatt |
123 |
Q |
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| T |
16087455 |
gtctttaatccttggtgcttatt |
16087433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 53838144 - 53838100
Alignment:
| Q |
5 |
actatgatagcatcttagaagttagaatactttaaacttaatcat |
49 |
Q |
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| T |
53838144 |
actatgatagcatcttagaagttagaataccttaagcttaatcat |
53838100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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