View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21390_low_15 (Length: 349)
Name: NF21390_low_15
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 2243051 - 2242703
Alignment:
| Q |
1 |
tcaaagtctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactgtcatttggaatcacatcttggcatacaa |
100 |
Q |
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| T |
2243051 |
tcaaagtctaaggattgctaagttatttcaacttatctagagaaaagtaacatgattgcaatttcttcactgtcatttggaatcacatcttggcatacaa |
2242952 |
T |
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| Q |
101 |
accaaacaccaaaaatttcatcctttgccaatccccttcaccaaattccaactcccattactgcgccaaccattgtatgtgttgccgatatcggtagccc |
200 |
Q |
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| T |
2242951 |
accaaacaccaaaaatttcatcccttgccaatccccttcaccaaattccaactcccattactgcgccaaccattgtatgtgttgccgatatcggtagccc |
2242852 |
T |
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| Q |
201 |
caaattcgaaacaaacagaacaatcgaatcagccgcaaataagcaacgtactcttattaaagtccctaataaaagtggtcagctatactgtttagagaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2242851 |
caaattcgaaacaaacagaacaatcgaatcagccgcaaataagcaacgtactcttattacagtccctaataaaagtggtcagctatactgtttagagaag |
2242752 |
T |
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| Q |
301 |
tttacattgtaggttgagatttaatccaatatgtcaagaaaagccagct |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242751 |
tttacattgtaggttgagatttaatccaatatgtcaagaaaagccagct |
2242703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 29057271 - 29057137
Alignment:
| Q |
1 |
tcaaagtctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactgtcatttggaatcaca-tcttggcataca |
99 |
Q |
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| T |
29057271 |
tcaaagtctaacgattgctaaattatttcaacttagctacagaaaagtaacatgtctgcaatttcatcagtctcttctgcaatcacagtcttcacataga |
29057172 |
T |
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| Q |
100 |
aaccaaacaccaaaaatttcatcctttgccaatcc |
134 |
Q |
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| T |
29057171 |
aatcaaacaccaaaaatttcatcccttgccaatcc |
29057137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 29056898 - 29056806
Alignment:
| Q |
147 |
tccaactcccattactgcgccaaccattgtatgtgttgccgatatcggtagccccaaattcgaaacaaacagaacaatcgaatcagccgcaaa |
239 |
Q |
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|||||||||||||||||| ||||| | |||||||| |||||||||||||||| | || ||| |||||||||||| ||| |||||||||| |
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| T |
29056898 |
tccaactcccattactgcaccaactagcgtatgtgtccccgatatcggtagccctagctttgaagcaaacagaacaactgaagcagccgcaaa |
29056806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 31780259 - 31780117
Alignment:
| Q |
1 |
tcaaagtctaaggattgctaagttattt----caacttatccagagaaaagtaacatgattgcaatttcttcactgtc------atttggaatcaca-tc |
89 |
Q |
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|||||||||||||||||| ||||||||| | ||||| | ||||||| |||||||| | ||||||||||||||| ||||||||||||| || |
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| T |
31780259 |
tcaaagtctaaggattgccaagttatttatttccacttacctagagaaa-gtaacatgtctacaatttcttcactgtgtcattaatttggaatcacagtc |
31780161 |
T |
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| Q |
90 |
ttggcatacaaaccaaacaccaaaaatttcatcctttgccaatc |
133 |
Q |
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| T |
31780160 |
ttcacatacaaaccaaacaccaaaaatttcatcccttgccaatc |
31780117 |
T |
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