View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21390_low_18 (Length: 292)
Name: NF21390_low_18
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 33595011 - 33595285
Alignment:
| Q |
1 |
ttctattatacataagcaatgagaccatttccccnnnnnnnagtttaacttttagccgcaattttaaatagcaacgttgccgcgattcttgttcttaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33595011 |
ttctattatacataagcaatgagaccatttcccctttttttagtttaacttttagccgcaattttaaatagcaacgttgccgcgattcttgttcttaaag |
33595110 |
T |
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| Q |
101 |
ataattgggatcaaatatagttgtctcgtggtcgctgggacataaaaataataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgcc |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33595111 |
ataattgggatcaaatatagttgtatcgtggtcgctgggacataaaaatcataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgct |
33595210 |
T |
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| Q |
201 |
actaacttttaacttaataaaccttgtttaaaataaatttgcttgctaattgtattacatgatgcaattggaaaa |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33595211 |
actaacttttaacttaataaaccttgtttaaaataaatttgcttgctaattgtattacatgatgcaattggaaaa |
33595285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 33602142 - 33602416
Alignment:
| Q |
1 |
ttctattatacataagcaatgagaccatttccccnnnnnnnagtttaacttttagccgcaattttaaatagcaacgttgccgcgattcttgttcttaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602142 |
ttctattatacataagcaatgagaccatttcccctttttttagtttaacttttagccgcaattttaaatagcaacgttgccgcgattcttgttcttaaag |
33602241 |
T |
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| Q |
101 |
ataattgggatcaaatatagttgtctcgtggtcgctgggacataaaaataataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgcc |
200 |
Q |
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| T |
33602242 |
ataattgggatcaaatatagttgtatcgtggtcgctgggacataaaaatcataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgct |
33602341 |
T |
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| Q |
201 |
actaacttttaacttaataaaccttgtttaaaataaatttgcttgctaattgtattacatgatgcaattggaaaa |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602342 |
actaacttttaacttaataaaccttgtttaaaataaatttgcttgctaattgtattacatgatgcaattggaaaa |
33602416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 33587839 - 33588113
Alignment:
| Q |
1 |
ttctattatacataagcaatgagaccatttccccnnnnnnnagtttaacttttagccgcaattttaaatagcaacgttgccgcgattcttgttcttaaag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
33587839 |
ttctattatacataagcaatgagaccatttcccctttttttagtttaacttttagccgcaattttaaatagcaatgttgccgcgatgcttgttcttaaag |
33587938 |
T |
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| Q |
101 |
ataattgggatcaaatatagttgtctcgtggtcgctgggacataaaaataataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgcc |
200 |
Q |
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| ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33587939 |
agaattgtgatcaaatatagttgtatcgtggtcgctgggacataaaaatcataatgttgtggcccaaattttaatagcatcctttatttaaaatcttgct |
33588038 |
T |
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| Q |
201 |
actaacttttaacttaataaaccttgtttaaaataaatttgcttgctaattgtattacatgatgcaattggaaaa |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33588039 |
actaacttttaacttaataaaccttgtttaaaataaatttgcttgctaattgtattacatgatgcaattggaaaa |
33588113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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