View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21390_low_19 (Length: 278)

Name: NF21390_low_19
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21390_low_19
NF21390_low_19
[»] chr3 (4 HSPs)
chr3 (44-144)||(27026365-27026465)
chr3 (49-144)||(23337830-23337925)
chr3 (41-118)||(22404229-22404306)
chr3 (89-144)||(23338051-23338106)
[»] chr4 (10 HSPs)
chr4 (45-144)||(12397878-12397977)
chr4 (44-144)||(12330855-12330955)
chr4 (45-144)||(3701373-3701471)
chr4 (37-118)||(48802818-48802899)
chr4 (43-139)||(48803082-48803178)
chr4 (80-144)||(12330666-12330730)
chr4 (23-118)||(13293630-13293725)
chr4 (172-250)||(39041286-39041364)
chr4 (80-144)||(4635189-4635254)
chr4 (80-124)||(40431623-40431667)
[»] chr2 (15 HSPs)
chr2 (45-144)||(13837203-13837302)
chr2 (45-144)||(37569579-37569678)
chr2 (47-144)||(12159414-12159511)
chr2 (45-144)||(38017713-38017812)
chr2 (45-144)||(11061743-11061842)
chr2 (45-140)||(38017499-38017594)
chr2 (41-125)||(42992364-42992448)
chr2 (44-144)||(12159637-12159739)
chr2 (45-125)||(11061910-11061990)
chr2 (44-118)||(41204887-41204961)
chr2 (43-118)||(19220979-19221054)
chr2 (178-233)||(36276200-36276255)
chr2 (45-144)||(38836906-38837005)
chr2 (44-117)||(38291409-38291484)
chr2 (58-118)||(40867019-40867079)
[»] chr1 (7 HSPs)
chr1 (45-144)||(5482052-5482151)
chr1 (43-144)||(3159169-3159270)
chr1 (56-144)||(5482274-5482362)
chr1 (44-144)||(50191321-50191421)
chr1 (45-144)||(3158945-3159044)
chr1 (163-251)||(15840923-15841011)
chr1 (49-118)||(33067226-33067295)
[»] scaffold0196 (2 HSPs)
scaffold0196 (44-144)||(9750-9850)
scaffold0196 (41-144)||(9521-9624)
[»] chr6 (9 HSPs)
chr6 (44-144)||(15292878-15292978)
chr6 (40-144)||(27792788-27792892)
chr6 (45-144)||(15293103-15293202)
chr6 (49-144)||(31730190-31730284)
chr6 (74-142)||(27792604-27792672)
chr6 (85-144)||(4964810-4964869)
chr6 (159-244)||(34105391-34105476)
chr6 (81-117)||(13255310-13255346)
chr6 (44-96)||(24988247-24988299)
[»] chr8 (5 HSPs)
chr8 (45-144)||(40795225-40795323)
chr8 (159-251)||(12883568-12883659)
chr8 (40-90)||(441948-441998)
chr8 (37-130)||(30805761-30805854)
chr8 (80-116)||(9203923-9203959)
[»] chr5 (5 HSPs)
chr5 (41-144)||(31264253-31264356)
chr5 (24-118)||(37517056-37517150)
chr5 (161-251)||(28765613-28765703)
chr5 (45-144)||(5497925-5498024)
chr5 (84-131)||(13001596-13001643)
[»] chr7 (3 HSPs)
chr7 (50-144)||(287699-287793)
chr7 (45-102)||(48467361-48467418)
chr7 (41-97)||(34608066-34608122)
[»] scaffold0092 (1 HSPs)
scaffold0092 (45-130)||(46594-46679)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 27026365 - 27026465
Alignment:
Q  44 taatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaatttt 143  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||||||| | |||| ||||| |||||||||||    
T  27026365 taatgttacaccgctcaatatcgttttactcaatgcatatttttcaaatttgaccgttggattgtaagtttatatcaaatagatcattaacgtaaatttt 27026464  T
Q  144 t 144  Q
    |    
T  27026465 t 27026465  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 23337830 - 23337925
Alignment:
Q  49 ttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||||||||||||||||||||| || ||  |||||||||||| || | ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  23337830 ttacaccgctcaatatcgttttactctatttatatttttcaaacttaactgttggattgtaagtttatatcacatagatcattcacgtaaattttt 23337925  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 22404229 - 22404306
Alignment:
Q  41 atgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatat 118  Q
    |||||||||||||||| ||||||| |||||| || || ||||||| ||||||||||| ||||||||||||| ||||||    
T  22404229 atgtaatgttacaccgttcaatattgttttactcgataaatatttgtcaaatttgatcgttggattgtaagattatat 22404306  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 23338106 - 23338051
Alignment:
Q  89 aaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    |||||||| ||||  ||||||||||||||| |||||| ||||||||||||||||||    
T  23338106 aaatttgactgttacattgtaagtttatatcacatagatcattcacgtaaattttt 23338051  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 12397878 - 12397977
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    |||||||||||||||||||| |||||| || ||| |||||||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  12397878 aatgttacaccgctcaatattgttttactcgatgtatattttttaaatttgatcgttggattgtaagtttatatcacatagatcattcacgtaaattttt 12397977  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 12330955 - 12330855
Alignment:
Q  44 taatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaatttt 143  Q
    |||||||||||| ||||||||||||||| || ||| ||||||||||||||||| |||||||||| |||||| ||| |||||| |||||||||||||||||    
T  12330955 taatgttacaccactcaatatcgttttactcgatgcatatttttcaaatttgaatgttggattgcaagtttttatcacatagatcattcacgtaaatttt 12330856  T
Q  144 t 144  Q
    |    
T  12330855 t 12330855  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 3701373 - 3701471
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| ||| | |||  ||||||| ||||||||||    
T  3701373 aatgttacaccactcaatatcgttttaatcaatacatatttttcaaatttga-tgttggattgtaagtttgtatcatataaatcattcatgtaaattttt 3701471  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 48802818 - 48802899
Alignment:
Q  37 actaatgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatat 118  Q
    ||||| |||||||||||||||||||||||||||||  |||| ||||||||  ||||||||   || ||||||||||||||||    
T  48802818 actaacgtaatgttacaccgctcaatatcgttttacccaattaatattttcaaaatttgacatttagattgtaagtttatat 48802899  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 48803178 - 48803082
Alignment:
Q  43 gtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaa 139  Q
    ||||||||||||||||||||||||||||| || || ||||||||| |||||| |   || |||||||| ||||||| |||||| | ||||| |||||    
T  48803178 gtaatgttacaccgctcaatatcgttttactcgattaatatttttaaaatttaaccattagattgtaattttatatcacatagatgattcatgtaaa 48803082  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 12330666 - 12330730
Alignment:
Q  80 atatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    |||||||||||||||||| |||||| ||||| ||||||| |||||  |||||| |||||||||||    
T  12330666 atatttttcaaatttgatcgttggagtgtaattttatatcacatatatcattcgcgtaaattttt 12330730  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 13293630 - 13293725
Alignment:
Q  23 ggggaacaaatcaaactaatgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatat 118  Q
    ||||| ||||| | ||||| ||||||||||||  || |||||| ||||| || ||  ||||||||||||||||| |||| || |||||||||||||    
T  13293630 ggggatcaaataacactaaagtaatgttacacatctaaatatcattttactctattcatatttttcaaatttgactgttagactgtaagtttatat 13293725  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 39041364 - 39041286
Alignment:
Q  172 ccttaatgatttgtttatggagtctggtggactgctcgctttatattcaagatcgggagtcagtttcttgacttaagtt 250  Q
    |||||||||||||||||  ||||||||||| | | || ||||  |||| ||||| ||||||||||||| |||| |||||    
T  39041364 ccttaatgatttgtttacagagtctggtgggccgatcacttttgattcgagatcaggagtcagtttctagactcaagtt 39041286  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 4635254 - 4635189
Alignment:
Q  80 atatttttcaaatttgattgttggattgtaagtttatatgacatag-gtcattcacgtaaattttt 144  Q
    |||||||| ||||||||  |||||||| ||||||||||| ||||||   |||||||||||||||||    
T  4635254 atattttttaaatttgaccgttggattataagtttatatcacatagaaacattcacgtaaattttt 4635189  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 40431623 - 40431667
Alignment:
Q  80 atatttttcaaatttgattgttggattgtaagtttatatgacata 124  Q
    ||||||| |||||||||| ||| |||||||||||||||| |||||    
T  40431623 atattttccaaatttgatagttagattgtaagtttatattacata 40431667  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 13837203 - 13837302
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    |||||||||||| |||||||| ||||| || ||| ||||||||||||||||||  ||||||||||||| ||||| |||||| ||||||||||||||||||    
T  13837203 aatgttacaccgttcaatatcattttactcgatgcatatttttcaaatttgatcattggattgtaagtgtatatcacatagatcattcacgtaaattttt 13837302  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 37569678 - 37569579
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    |||||||||||||| |||||||||||| ||  || |||||||||||||||||| || ||||||| ||||||||| |||||| ||||||||||||||||||    
T  37569678 aatgttacaccgctaaatatcgttttactcggtgtatatttttcaaatttgatcgtcggattgttagtttatatcacatagatcattcacgtaaattttt 37569579  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 12159414 - 12159511
Alignment:
Q  47 tgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||| || |||||||||||||||| |||||| |||||||| ||||||| | |||||||||||||||||||| |||| | ||||| ||||||||||||    
T  12159414 tgttatactgctcaatatcgttttactcaatgcatattttttaaatttggtcgttggattgtaagtttatatcacatggatcattaacgtaaattttt 12159511  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 38017812 - 38017713
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||||||||  ||||||||||||||| || ||| |||||||| ||||||||  |||| ||||||||||||||| |||||| |||| |||||||||||||    
T  38017812 aatgttacacttctcaatatcgttttactcgatgcatattttttaaatttgaccgttgcattgtaagtttatatcacatagatcatccacgtaaattttt 38017713  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 11061743 - 11061842
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    |||||||||||| |||||||||||||  || ||| |||||||| |||| |||  |||||||||||||||||||| |||||| |||||||  |||||||||    
T  11061743 aatgttacaccgttcaatatcgttttgttcgatgcatattttttaaatatgacggttggattgtaagtttatatcacatagatcattcatataaattttt 11061842  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 38017499 - 38017594
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaat 140  Q
    |||||||||||||| ||||| |||||| || ||| |||||||| ||||||||  ||||||||||| |||||||| |||||| |||| |||||||||    
T  38017499 aatgttacaccgcttaatattgttttactctatgcatattttttaaatttgagcgttggattgtaggtttatatcacatagatcatccacgtaaat 38017594  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 42992364 - 42992448
Alignment:
Q  41 atgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacatag 125  Q
    ||||||||||||| ||||||||||||||||| || | | ||||||||  |||||||  |||||||||||||||||||| ||||||    
T  42992364 atgtaatgttacatcgctcaatatcgttttactcgaagcatatttttttaatttgaccgttggattgtaagtttatatcacatag 42992448  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 12159739 - 12159637
Alignment:
Q  44 taatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtt--tatatgacataggtcattcacgtaaatt 141  Q
    |||||||||||||||| |||| |||||| || ||| |||||||| ||||||||  ||||||||||| |||  ||||| | |||| |||||||| ||||||    
T  12159739 taatgttacaccgctctatattgttttactcgatgcatatttttaaaatttgaccgttggattgtatgtttatatattatatagatcattcacataaatt 12159640  T
Q  142 ttt 144  Q
    |||    
T  12159639 ttt 12159637  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 11061990 - 11061910
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacatag 125  Q
    ||||||||| ||||||||||||||||| || ||| || ||||| |||||| |  |||||||||||| ||||||| ||||||    
T  11061990 aatgttacaacgctcaatatcgttttactcgatgcatgttttttaaattttaccgttggattgtaattttatatcacatag 11061910  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 41204887 - 41204961
Alignment:
Q  44 taatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatat 118  Q
    ||||||||||  ||| ||||| |||||| || ||  ||||||||  |||||||||||||||||||||||||||||    
T  41204887 taatgttacaatgcttaatattgttttattcgattcatatttttttaatttgattgttggattgtaagtttatat 41204961  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 19221054 - 19220979
Alignment:
Q  43 gtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatat 118  Q
    ||||||||| |||  |||||||||||||| || ||  |||||||||||||||||  ||| |||| |||||||||||    
T  19221054 gtaatgttataccattcaatatcgttttactcgattcatatttttcaaatttgaccgtttgattataagtttatat 19220979  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 36276255 - 36276200
Alignment:
Q  178 tgatttgtttatggagtctggtggactgctcgctttatattcaagatcgggagtca 233  Q
    ||||||| |||||||||||||||| ||| |||||||  |||| |||||||||||||    
T  36276255 tgatttggttatggagtctggtgggctgttcgcttttgattcgagatcgggagtca 36276200  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 38836906 - 38837005
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||||||||||||||||||  ||||||||  |  |||||||| ||||| |||||||| ||| ||| ||||||| | |||| |||| ||  |||||||||    
T  38836906 aatgttacaccgctcaatattattttaatcgttatatattttttaaattagattgttgaattataattttatatcatatagatcatccatttaaattttt 38837005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 38291409 - 38291484
Alignment:
Q  44 taatgttacaccgc--tcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttata 117  Q
    ||||||||||||||  |||||||||||||| || ||  |||||||| | ||||||||||| | |||||| ||||||    
T  38291409 taatgttacaccgcgttcaatatcgttttactcgattcatattttttatatttgattgttaggttgtaaatttata 38291484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 40867079 - 40867019
Alignment:
Q  58 tcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatat 118  Q
    |||||||| ||||| | |||  |||||||||| |||||||||||| ||| |||||||||||    
T  40867079 tcaatatcattttacttaatttatatttttcatatttgattgttgaattttaagtttatat 40867019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 5482052 - 5482151
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||||||||||||||||||| ||||| || ||  ||||||||||||||| |||||||||||  |||||||||| |||||| ||||||||||||||||||    
T  5482052 aatgttacaccgctcaatatcattttactctatccatatttttcaaatttaattgttggatttgaagtttatatcacatagatcattcacgtaaattttt 5482151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 3159270 - 3159169
Alignment:
Q  43 gtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattt 142  Q
    ||||||||||| || |||||||||||||| || ||| ||||||||||||||| |  |||||||||||||||||||| |||||| ||||| ||||||||||    
T  3159270 gtaatgttacatcgatcaatatcgttttactctatgcatatttttcaaattttaccgttggattgtaagtttatattacatagatcatttacgtaaattt 3159171  T
Q  143 tt 144  Q
    ||    
T  3159170 tt 3159169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 5482362 - 5482274
Alignment:
Q  56 gctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    |||||||||||||||| || ||| |||||||| ||||||||| |||||||| ||||||||||| |||||| ||||||||||||| ||||    
T  5482362 gctcaatatcgttttactcgatgcatattttttaaatttgatcgttggattataagtttatatcacatagatcattcacgtaaaatttt 5482274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 50191321 - 50191421
Alignment:
Q  44 taatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaatttt 143  Q
    ||||||||||||| | |||||||||||| || ||| |||||||||||||||||  || |||||||| |||||||| | |||| |||||||||||||||||    
T  50191321 taatgttacaccgtttaatatcgttttactcgatgcatatttttcaaatttgacagtaggattgtatgtttatatcatatagatcattcacgtaaatttt 50191420  T
Q  144 t 144  Q
    |    
T  50191421 t 50191421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 3158945 - 3159044
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||||| || |||||||||||||||| || | | |||||||||||||||||  |||| |||||| |||||||| | |||| || |||| ||||||||||    
T  3158945 aatgttatactgctcaatatcgttttactcgaggtatatttttcaaatttgaccgttgtattgtatgtttatatcatatagatcgttcatgtaaattttt 3159044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 15841011 - 15840923
Alignment:
Q  163 tgagtggttccttaatgatttgtttatggagtctggtggactgctcgctttatattcaagatcgggagtcagtttcttgacttaagttt 251  Q
    |||| |||||||||  ||||||||| | ||||||||||| ||| || ||||  |||| |||||||||||||||||||||| | ||||||    
T  15841011 tgaggggttccttagggatttgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagttt 15840923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 33067295 - 33067226
Alignment:
Q  49 ttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatat 118  Q
    |||||| |||||||||||||||| || ||  |||||||| ||| |||||||||| | |||||||||||||    
T  33067295 ttacactgctcaatatcgttttactcgatacatattttttaaagttgattgttgaaatgtaagtttatat 33067226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 9850 - 9750
Alignment:
Q  44 taatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaatttt 143  Q
    ||||||||||||||||||||  |||||| || ||| |||| ||| ||||||||  |||||||||||||||||||| |||||| |||||||| ||||||||    
T  9850 taatgttacaccgctcaatactgttttactcgatgcatatattttaaatttgaccgttggattgtaagtttatatcacatagatcattcacataaatttt 9751  T
Q  144 t 144  Q
    |    
T  9750 t 9750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 9521 - 9624
Alignment:
Q  41 atgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaat 140  Q
    |||||||| |||| |  |||||||||||||| |  || ||||||||||||||||||  |||||||||||||||||||| ||||   ||||||||||||||    
T  9521 atgtaatgctacatcaatcaatatcgttttacttgataaatatttttcaaatttgaccgttggattgtaagtttatatcacatgaatcattcacgtaaat 9620  T
Q  141 tttt 144  Q
    ||||    
T  9621 tttt 9624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 15292878 - 15292978
Alignment:
Q  44 taatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaatttt 143  Q
    |||| ||||| ||||||||||||||||| || ||| |||||||||||||||||  |||||||||||| || |||| | |||| |||||||||||||||||    
T  15292878 taatattacatcgctcaatatcgttttactcgatgcatatttttcaaatttgaccgttggattgtaatttaatatcatatagatcattcacgtaaatttt 15292977  T
Q  144 t 144  Q
    |    
T  15292978 t 15292978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 27792892 - 27792788
Alignment:
Q  40 aatgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaa 139  Q
    ||||||||||||||  |||||||||  ||||| || ||| ||||||||||||||||||   || ||| ||||||||||| |||||| | |||||||||||    
T  27792892 aatgtaatgttacattgctcaatataattttactcgatgcatatttttcaaatttgatcaatgaattataagtttatatcacatagataattcacgtaaa 27792793  T
Q  140 ttttt 144  Q
    |||||    
T  27792792 ttttt 27792788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 15293202 - 15293103
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||||||||||||||||||||||||| || ||| |||||||| ||||||||  |||||||  |||||| |||| | |||| |||||||| || ||||||    
T  15293202 aatgttacaccgctcaatatcgttttactcgatgcatattttttaaatttgaccgttggatcataagttaatatcatatagatcattcacatatattttt 15293103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 31730190 - 31730284
Alignment:
Q  49 ttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    |||||||||||| |||||||| | || ||| |||||||| ||||||||  ||| |||||||||||||||| |||||| ||||||| ||||||||||    
T  31730190 ttacaccgctca-tatcgtttcactcgatgcatattttttaaatttgaccgttagattgtaagtttatatcacatagatcattcaagtaaattttt 31730284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 27792604 - 27792672
Alignment:
Q  74 caatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattt 142  Q
    ||||| ||||| || ||||||||  |||||||||||||||||||| |||||| ||||||||||||||||    
T  27792604 caatgcatattctttaaatttgaccgttggattgtaagtttatatcacatagatcattcacgtaaattt 27792672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 4964869 - 4964810
Alignment:
Q  85 tttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||||||||||  ||| |||||||||||||||| | |||| |||||||||| |||||||    
T  4964869 tttcaaatttgaccgttagattgtaagtttatatcatatagatcattcacgtgaattttt 4964810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 34105391 - 34105476
Alignment:
Q  159 gagttgagtggttccttaatgatttgtttatggagtctggtggactgctcgctttatattcaagatcgggagtcagtttcttgact 244  Q
    |||||||  ||| ||||| |||||||||| | |||| |||||| | | || ||||  |||| ||||||||||||||||||||||||    
T  34105391 gagttgaagggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtttcttgact 34105476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 13255310 - 13255346
Alignment:
Q  81 tatttttcaaatttgattgttggattgtaagtttata 117  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  13255310 tattttttaaatttaattgttggattgtaagtttata 13255346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 24988299 - 24988247
Alignment:
Q  44 taatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttga 96  Q
    |||||||||||||||||||||||||||| |  ||  |||||||| ||||||||    
T  24988299 taatgttacaccgctcaatatcgttttacttgatacatattttttaaatttga 24988247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 40795225 - 40795323
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||||||||||||||||||||||||| || ||  |||||||||||||||||  ||||||||||||| |||||| | |||| ||||||| ||||||||||    
T  40795225 aatgttacaccgctcaatatcgttttattcgatacatatttttcaaatttgaccgttggattgtaag-ttatatcatatagatcattcatgtaaattttt 40795323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 12883568 - 12883659
Alignment:
Q  159 gagttgagtggttccttaatgatttgtttatggagtctggtggactgctcgctttatattcaagatcgggagtcagtttcttgacttaagttt 251  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||| | |||||||  |||| ||||||  ||||||| || ||||||||||||    
T  12883568 gagttgaggggtgccttaataatttgtttatggagtctggtggaccgatcgcttt-gattcgagatcgaaagtcagtgtcgtgacttaagttt 12883659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 441998 - 441948
Alignment:
Q  40 aatgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaa 90  Q
    ||||||||||| |||||||||||||||||||| |||||  |||||| ||||    
T  441998 aatgtaatgtttcaccgctcaatatcgttttactcaatacatatttatcaa 441948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 30805854 - 30805761
Alignment:
Q  37 actaatgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcat 130  Q
    |||||||||||||||||||  |||||||||||||| || |   |||||||| ||||||||   || ||||||||  |||||||| |||| ||||    
T  30805854 actaatgtaatgttacacctttcaatatcgttttactctacatatattttttaaatttgaacatttgattgtaaacttatatgatatagatcat 30805761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 9203959 - 9203923
Alignment:
Q  80 atatttttcaaatttgattgttggattgtaagtttat 116  Q
    |||||||| |||||||||||||| |||||||||||||    
T  9203959 atattttttaaatttgattgttgaattgtaagtttat 9203923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 31264356 - 31264253
Alignment:
Q  41 atgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaat 140  Q
    |||||||||||||| |||||||||||||||| || ||  |||||||||||||||||  ||| || ||||||||| ||| | |||| |||||||||| |||    
T  31264356 atgtaatgttacactgctcaatatcgttttactcgatacatatttttcaaatttgacagttagactgtaagtttgtatcatatagatcattcacgtgaat 31264257  T
Q  141 tttt 144  Q
    ||||    
T  31264256 tttt 31264253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 37517056 - 37517150
Alignment:
Q  24 gggaacaaatcaaactaatgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatat 118  Q
    |||| ||||| | ||| |||||||||||||||| |||||||||||||| || ||| |||||||| ||| ||||  |||| |||||||||||||||    
T  37517056 gggatcaaattacactgatgtaatgttacaccgttcaatatcgttttactcgatgcatattttttaaaattgaccgttgaattgtaagtttatat 37517150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 28765703 - 28765613
Alignment:
Q  161 gttgagtggttccttaatgatttgtttatggagtctggtggactgctcgctttatattcaagatcgggagtcagtttcttgacttaagttt 251  Q
    |||||| ||| || ||||||||| ||| | || ||||||||| || || ||||  |||| |||||| ||||||||||||||||||||||||    
T  28765703 gttgaggggtgccctaatgatttttttctagattctggtggattgatcacttttgattcgagatcgagagtcagtttcttgacttaagttt 28765613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 5498024 - 5497925
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    |||||||||||||||||||| |||||| || ||  |||||||| ||||||||  ||||||    |||||||||| | |||| | |||||| |||||||||    
T  5498024 aatgttacaccgctcaatattgttttactcgatacatatttttaaaatttgaccgttggagaacaagtttatatcatatagatgattcacataaattttt 5497925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 13001643 - 13001596
Alignment:
Q  84 ttttcaaatttgattgttggattgtaagtttatatgacataggtcatt 131  Q
    |||||||||||||| |||||||||||||||||||| | |||| |||||    
T  13001643 ttttcaaatttgatcgttggattgtaagtttatattaaatagatcatt 13001596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 287699 - 287793
Alignment:
Q  50 tacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcattcacgtaaattttt 144  Q
    ||||||||| ||||||||| || || ||| |||||||| |||||||    ||||||| ||||||||||| |||||| ||||||||||||||||||    
T  287699 tacaccgcttaatatcgttatagtcgatgcatatttttaaaatttgccctttggattttaagtttatatcacatagatcattcacgtaaattttt 287793  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 48467418 - 48467361
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttg 102  Q
    |||||||||||| |||||||| |||||||  ||  |||||||||||||||||||||||    
T  48467418 aatgttacaccgttcaatatcattttaattgatacatatttttcaaatttgattgttg 48467361  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 34608122 - 34608066
Alignment:
Q  41 atgtaatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgat 97  Q
    |||||||||||||||  ||||||| |||||| |||||  || |||||||||||||||    
T  34608122 atgtaatgttacaccattcaatattgttttattcaatacatgtttttcaaatttgat 34608066  T

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Target: scaffold0092 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 46594 - 46679
Alignment:
Q  45 aatgttacaccgctcaatatcgttttaatcaatgaatatttttcaaatttgattgttggattgtaagtttatatgacataggtcat 130  Q
    ||||||||||| |||||||||| ||||  | || ||||||||| ||||||||  ||| |||||||||||||||| |||||| ||||    
T  46594 aatgttacaccactcaatatcgctttaccccattaatatttttaaaatttgaccgttagattgtaagtttatatcacatagatcat 46679  T

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